Resultados de búsqueda - "bioinformatics"

ILRI medium-term plan 2008-2010. Livestock: a pathway out of poverty por International Livestock Research Institute

“…To implement this strategy, ILRI has organized its research program around four inter-related and output-focused themes (MTP Projects), which are: ‘Targeting and Innovation’ (identifying opportunities, setting priorities, understanding innovation systems); ‘Market Opportunities’ (enhancing market success of the poor); ‘Biotechnology’ (biosciences and bioinformatics for animal health and genetics); ‘People, Livestock and the Environment’ (natural resource solutions in livestock systems). …”
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In silico characterization and structural modeling of Dermacentor andersoni p36 immunosuppressive protein por Oyugi, M.O., Kinyua, J.K., Magiri, E.N., Kigoni, M.W., Costa, E.P., Githaka, Naftaly W.

“…To identify potential unique structural and dynamic properties responsible for the immunosuppressive function of p36 proteins, this study utilized bioinformatic tool to characterize and model structure of D. andersoni p36 protein. …”
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Proteomic characterization of rabbit (Oryctolagus cuniculus) sperm from two different genotypes por Casares-Crespo, Lucía, Fernández-Serrano, Paula, Viudes-De-Castro, María P.

“…Sperm proteins were extracted and subjected to in-gel digestion nano LC-MS/MS and bioinformatics analysis. The resulting library included 487 identified proteins validated with ≥95% Confidence (unused Score ≥ 1.3). …”
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Robust and efficient software for reference-free genomic diversity analysis of GBS data on diploid and polyploid species por Parra Salazar, Andrea, Gomez, Jorge, Lozano Arce, Daniela, Reyes Herrera, Paula H., Duitama, Jorge

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Diversity of endogenous avian leukosis virus subgroup E (ALVE) insertions in indigenous chickens por Mason, A.S., Miedzinska, K., Kebede, A., Bamidele, Oladeji, Al-Jumaili, A.S., Dessie, Tadelle, Hanotte, Olivier H., Smith, J.

“…The wider diversity of ALVE in non-commercial chickens and the role of these elements in ERV-derived immunity (EDI) are yet to be investigated.In total, 974 different ALVE were identified from 407 chickens sampled from village populations in Ethiopia, Iraq, and Nigeria, using the recently developed obsERVer bioinformatics identification pipeline. Eighty-eight percent of all identified ALVE were novel, bringing the known number of ALVE integrations to more than 1300 across all analysed chickens. …”
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AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative visualization of big data por Alsamman, Alsamman M., El Allali, Achraf, Mokhtar, Morad M., Al-Shamaa, Khaled, Nassar, Ahmed E., Mousa, Khaled H., Kehel, Zakaria

“…There are currently no bioinformatics tools that permit post-MSA analysis, in which data on gene and single nucleotide scales could be combined with gene annotations and used for cluster analysis. …”
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Open access resources for genome-wide association mapping in rice por McCouch, Susan R., Wright, Mark H., Tung, Chih-Wei, Maron, Lyza G., McNally, Kenneth L., Fitzgerald, Melissa, Singh, Namrata, DeClerck, Genevieve, Agosto-Perez, Francisco, Korniliev, Pavel, Greenberg, Anthony J., Naredo, Ma. Elizabeth B., Mercado, Sheila Mae Q., Harrington, Sandra E., Shi, Yuxin, Branchini, Darcy A., Kuser-Falcão, Paula R., Leung, Hei, Ebana, Kowaru, Yano, Masahiro, Eizenga, Georgia, McClung, Anna, Mezey, Jason

“…The platform provides an immortal collection of diverse germplasm, a high-density single-nucleotide polymorphism data set tailored for gene discovery, well-documented analytical strategies, and a suite of bioinformatics resources to facilitate biological interpretation. …”
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Harnessing multi-country cooperations, initiatives, facilities, and technologies for advancing livestock genetic improvement in Africa por Mapholi, N.O., Banga, C., Mrode, Raphael A., Opoola, O., Houaga, I., Nesengani, L.T., Ibeagha-Awemu, E.M.

“…This chapter draws attention to multi-country initiatives and benefits for performance recording as well as success stories in Africa (Sect. 29.2), the benefits of data sharing (Sect. 29.3), the role and importance of core facilities, especially those associated with the technologies of genomics, proteomics, metabolomics, metagenomics, and statistical/bioinformatics management of data (Sect. 29.4), germplasm centers for the storage of genetic materials or seed stock (Sect. 29.5), and the important place and prospect of multi-country genetic evaluations and practical application in Africa (Sects. 29.6 and 29.7). …”
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IRRI's Digital and Data Strategy (Framework) por Gimena, Joy Marie

“…These activities will ultimately seek to create impact by improving advisory support services (e.g., Analytics, Geo-Spatial, Climate Credit Modeling, Data Science, Bioinformatics), targeted research for higher yields and farmer resiliency, incubate more cohesive research, and drive data and model validation with partners.…”
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Identification of bovine cytotoxic T lymphocyte epitopes on the intracellular parasite Theileria Parva por Graham, S.P., Pelle, Roger, Villiers, Etienne P. de, Yamage, M., Mwangi, David Miano, Honda, Y., Ellis, S.A., MacHugh, Niall D., Morrison, W. Ivan, Taracha, E.L.N.

“…These data were used to evaluate the ability of available bioinformatics software to successfully identify bovine CTL epitopes. …”
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Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations using next-generation sequencing por Vasoya, D., Law, A., Motta, P., Mingyan Yu, Muwonge, A., Cook, Elizabeth A.J., Xiaoying Li, Bryson, K., MacCallam, A., Sitt, Tatjana, Toye, Philip G., Bronsvoort, B.M. de C., Watson, Mick, Morrison, W. Ivan, Connelley, T.

“…In this study we have developed a MiSeq platform approach and requisite bioinformatics pipeline to facilitate typing of bovine MHCI repertoires. …”
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Opportunities and Challenges to Implementing Genomic Selection in Clonally Propagated Crops por Gemenet, D., Khan, A.

“…We identify challenges associated with specific features of clonal crops to be addressed in GS models and highlight development of improved marker and bioinformatics platforms to distinguish between paralogous copies and to incorporate partial heterozygosity and allele dosage determination.…”
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iMap: a databasedriven utility to integrate and access the genetic and physical maps of maize por Fang, Z., Cone, K., Sánchez Villeda, H., Polacco, M., McMullen, M., Schroeder, S., Gardiner, J., Davis, G., Havermann, S., Yim, Y., Vroh Bi, Irie, Coe, E., Bi, I.V.

“…Motivation: Because of the unique biological features, a bioinformatic platform for the integrated genetic and physical map of maize is required for storing, integrating, accessing and visualizing the underlying data. …”
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Genomic analysis for cattle breeding improvement, progress and future perspectives in Peru: a review por Figueroa Venegas, Deyanira antonella, Romero Avila, Yolanda Madelein, Heredia Vilchez, Lizeth A., Poemape Tuesta, Carlos Augusto, Alvarado, Wigoberto, Quilcate Pairazaman, Carlos Enrique

“…Future perspectives for livestock genomics in Peru involveexpanding bioinformatics capacity, improving genomic infrastructure, and integratinggenomic selection into national breeding strategies. …”
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Rabbit seminal plasma proteome: The importance of the genetic origin por Casares-Crespo, Lucía, Fernández-Serrano, Paula, Vicente, José Salvador, Marco-Jiménez, Francisco, Viudes-De-Castro, María P.

“…SP proteins of the two experimental groups were recovered and subjected to in-solution digestion nano LC-MS/MS and bioinformatics analysis. The resulting library included 402 identified proteins validated with >= 95% Confidence (unused Score >= 1.3). …”
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High-throughput functional annotation and data mining with the Blast2GO suite por Gotz, Stefan, García-Gómez, Juan M., Terol, Javier, Williams, Tim D., Nagaraj, Shivashankar H., Nueda, María J., Robles, Montserrat, Talón, Manuel, Dopazo, Joaquín, Conesa, Ana

“…Therefore, there is an increasing need for bioinformatics resources which are able to cope with large amount of sequence data, produce valuable annotation results and are easily accessible to laboratories where functional genomics projects are being undertaken. …”
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Parallels and discrepancies between non-native species introductions and human migration por Ahmed, Danish A., Sousa, Ronaldo, Bortolus, Alejandro, Aldemir, Ceray, Angeli, Nicole F., Błonska, Dagmara, Briski, Elizabeta, Britton, J. Robert, Cano-Barbacil, Carlos, Clark-Ginsberg, Aaron, Culic, Irina, Cuthbert, Ross N., Dick, Jaimie, Dimarco, Romina Daniela, Haubrock, Phillip J.

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Vigilancia nacional de aislamientos clínicos de Enterococcus faecalis resistentes al linezolid portadores del gen optrA en Colombia, 2014-2019 por Saavedra, Sandra Yamile, Bernal, Johan Fabian, Montilla Escudero, Efrain, Torres, German, Rodríguez, Mabel Karina, Hidalgo, Andrea Melissa, Ovalle, María Victoria, Rivera, Sandra, Perez Gutierrez, Enrique, Duarte, Carolina

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Trends in theoretical plant epidemiology por Scherm, H., Ngugi, H., Ojiambo, P.

“…However, apart from merely adopting statistical tools from other disciplines, plant epidemiologists should be more proactive in exploring potential applications of their concepts and procedures in rapidly expanding disciplines such as statistical genetics or bioinformatics. Although providing the scientific basis for disease management will always be the raison d'être for plant epidemiology, a broader perspective will help the discipline to remain relevant as more resources are being devoted to genomic and ecosystem-level science. …”
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An integrated molecular and conventional breeding scheme for enhancing genetic gain in maize in Africa por Gedil, Melaku A, Menkir, A.

“…The revolution unfolding in the areas of genomics, bioinformatics, and phenomics is generating innovative tools, resources, and technologies for transforming crop breeding programs. …”
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