Search Results - "Proteomics"

High quality draft genomes of the Mycoplasma mycoides subsp.mycoides challenge strains Afadé and B237 by Fischer, A., Santana-Cruz, I., Hegerman, J., Gourle, H., Schieck, Elise G., Lambert, M., Nadendla, S., Wesonga, H.O., Miller, R.A., Vashee, S., Weber, J., Meens, J., Frey, J., Jores, Joerg

“…The information provided will enable downstream ‘omics’ applications such as proteomics, transcriptomics and reverse vaccinology approaches. …”
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A new frontier in understanding food: Mapping food quality to improve human and planetary health by Ahmed, Selena

“…High-resolution omics tools—metabolomics, lipidomics, proteomics, and genomics—have transformed medicine and drug discovery for decades. …”
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Diagnosis and Detection of the Main Bacterial Pathogens of Stone Fruit and Almond by López, María M., Roselló, Montserrat, Palacio-Bielsa, Ana

“…The new advances in genomics and proteomics will provide information for selecting new targets to develop specific and sensitive techniques for the diagnosis and detection of these bacterial pathogens in plant material.…”
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Somatic embryogenesis in coffee: the evolution of biotechnology and the integration of omics technologies offer great opportunities by Campos, N.A., Panis, Bartholomeus, Carpentier, Sebastien C.

“…The aim of this review is to provide an overview of which achievements and molecular insights have been gained in (coffee) somatic embryogenesis and encourage researchers to invest further in the in vitro technology and combine it with the latest omics techniques (genomics, transcriptomics, proteomics, metabolomics, and phenomics). We conclude that the evolution of biotechnology and the integration of omics technologies offer great opportunities to (i) optimize the production process of SE and the subsequent conversion into rooted plantlets and (ii) to screen for possible somaclonal variation. …”
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Conformationally Restricted Peptides from Rice Proteins Elicit Antibodies That Recognize the Corresponding Native Protein in ELISA Assays by Barrera, Nubia F., Melgarejo, Luz M., Cruz Gallego, Maribel, Cortés, Lina Jimena, Guzmán, Fanny, Calvo, Julio C.

“…To identify proteins associated to the insect and virus signaling, a comparative proteomics study was performed. By comparing proteomic profiles, between virus-infected and control group plants in two-dimensional electrophoresis, proteins exhibiting significant changes in abundance were found. …”
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Building the capacity of Africa for biosciences in agriculture by Shah, Tushaar, Terry, Eugene R.

“…The facilities at BecA’s hub offers state-of-the-art research laboratories for the biosciences, including genomics, proteomics, gene technology, immunology, bioinformatics and containment facilities for safe genetic manipulation of plants and micro-organisms (e.g. for vaccine development). …”
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Proteomelevel change in the roots of Pisum sativum L. in response to salinity by Kav, N.N., Srivastava, S., Goonewardene, L., Blade, S.F.

“…We initiated a proteomics-based approach to identify root proteins affected by salinity in pea (Pisum sativum cv. …”
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Innovative tools for detection of plant pathogenic viruses and bacteria by López, María M., Bertolini, Edson, Olmos, Antonio, Caruso, Paola, Gorris, María T., Llop, Pablo, Penyalver, Ramón, Cambra, Mariano

“…The advances in research that will result from the sequencing of many plant pathogen genomes, especially now in the era of proteomics, represent a new source of information for the future development of sensitive and specific detection techniques for these microorganisms.…”
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Analysis of genetic diversity of banana weevils (Cosmopolites sordidus) (Coleoptera: Curculionidae) using tanscriptome-derived simple sequence repeat markers by Milton, Ali, Muhanguzi, Dennis, Male, Allan, Kajubi, Ali, Buah, Stephen, Kubiriba, Jerome, Tumuhimbise, Robooni

“…Advances in genomics, proteomics, and sequencing technologies have provided powerful pathways to genotyping disastrous pests such as C. sordidus. …”
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Meta-analysis of rice phosphoproteomics data to understand variation in cell signaling across the rice pan-genome by Ramsbottom, Kerry A., Prakash, Ananth, Perez-Riverol, Yasset, Camacho, Oscar Martin, Sun, Zhi, Kundu, Deepti J., Bowler-Barnett, Emily, Martin, Maria, Fan, Jun, Chebotarov, Dmytro, McNally, Kenneth L., Deutsch, Eric W., Vizcaíno, Juan Antonio, Jones, Andrew R.

“…In this study, we have reanalyzed publicly available mass spectrometry proteomics data sets enriched for phosphopeptides from Asian rice (Oryza sativa). …”
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Harnessing multi-country cooperations, initiatives, facilities, and technologies for advancing livestock genetic improvement in Africa by Mapholi, N.O., Banga, C., Mrode, Raphael A., Opoola, O., Houaga, I., Nesengani, L.T., Ibeagha-Awemu, E.M.

“…This chapter draws attention to multi-country initiatives and benefits for performance recording as well as success stories in Africa (Sect. 29.2), the benefits of data sharing (Sect. 29.3), the role and importance of core facilities, especially those associated with the technologies of genomics, proteomics, metabolomics, metagenomics, and statistical/bioinformatics management of data (Sect. 29.4), germplasm centers for the storage of genetic materials or seed stock (Sect. 29.5), and the important place and prospect of multi-country genetic evaluations and practical application in Africa (Sects. 29.6 and 29.7). …”
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Bridging Genes and Sensory Characteristics in Legumes: Multi-Omics for Sensory Trait Improvement by Sharma, Niharika, Mukhopadhyay, Soumi Paul, Onkarappa, Dhanyakumar, Yogendra, Kalenahalli, Ratanpaul, Vishal

“…By integrating data from genomics, transcriptomics, proteomics and metabolomics, the genetic and biochemical networks that directly dictate sensory perception can be comprehensively unveiled. …”
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Genes transcribed in the salivary glands of female Rhipicephalus appendiculatus ticks infected with Theileria parva by Nene, Vishvanath M., Lee, D., Kang'a, S., Skilton, Robert A., Shah, Tushaar, Villiers, Etienne P. de, Mwaura, S., Taylor, D., Quackenbush, J., Bishop, Richard P.

“…The EST data will be a useful resource for construction of microarrays to probe vector biology, vector–host and vector–pathogen interactions and to underpin gene identification via proteomics approaches.…”
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Breeding aflatoxinresistant maize lines using recent advances in technologies a review by Brown, R., Menkir, A., Chen, Z., Bhatnagar, D., Yu, J., Yao, H., Cleveland, T.

“…With the new tools of proteomics and genomics, identification of resistance mechanisms, and rapid resistance marker selection methodologies, there is an increasing possibility of finding significant resistance in corn, and in understanding the mechanism of this resistance.…”
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Planteome: A resource for common reference ontologies and applications for plant biology by Jaiswal, P., Cooper, Laurel D., Elser, J.L., Meier, A., Laporte, Marie-Angélique, Mungall, C., Smith, B., Johnson, E.K.S., Seymour, M., Preece, J., Xu, X., Kitchen, R.S., Qu, B., Zhang, E., Arnaud, Elizabeth, Carbon, S., Todorovic, S., Stevenson, D.W.

“…Linking these analyses to the growing corpus of genomics data generated by high-throughput sequencing, transcriptomics, proteomics, phenomics and genome annotation projects requires common, interoperable, reference vocabularies (ontologies) for the description of the data. …”
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Multiomics approaches on extremophiles and their application in the biological management of e-waste by Hualpa Cutipa, Edwin, Solórzano Acosta, Richard Andi, Landa Acuña, Daniela, Mendoza León, Janelle

“…Therefore, the aim of this chapter is to provide details on the microbes that degrade electronic waste (e-waste) and their study under a multiomic perspective (genomics, transcriptomics, metabolomics, and proteomics).…”
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Non-additive gene regulation in a citrus allotetraploid somatic hybrid between C. reticulata Blanco and C. limon (L.) Burm by Bassene, Jean Baptiste, Froelicher, Yann, Dubois, C., Ferrer, Rosa M., Navarro, Luis, Ollitrault, Patrick, Ancillo, Gema

“…These results suggest there is a global dominance of the mandarin transcriptome, in consistence with our previous studies on aromatic compounds and proteomics. Interspecific differentiation of gene expression and non-additive gene regulation involved various biological pathways and different cellular components.…”
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An alfalfa MYB‐like transcriptional factor MsMYBH positively regulates alfalfa seedling drought resistance and undergoes MsWAV3‐mediated degradation by Kun Shi, Jia Liu, Huan Liang, Hongbin Dong, Jinli Zhang, Yuanhong Wei, Le Zhou, Shaopeng Wang, Jiahao Zhu, Mingshu Cao, Jones, Christopher S., Dongmei Ma, Zan Wang

“…Compared with the wild-types, the biomass and forage quality were enhanced in MsMYBH overexpressed plants. Combined RNA-seq, proteomics and chromatin immunoprecipitation analysis showed that MsMYBH can directly bind to the promoters of MsMCP1, MsMCP2, MsPRX1A and MsCARCAB to improve their expression. …”
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Wild Lathyrus—A Treasure of Novel Diversity by Singh, Akanksha, Balech, Rind, Barpete, Surendra, Gupta, Priyanka, Bouhlal, Outmane, Tawkaz, Sawsan, Kaul, Smita, Tripathi, Kuldeep, Amri, Ahmed, Maalouf, Fouad, Gupta, Sanjeev, Agrawal, Shiv Kumar

“…Further progress in omics technologies—such as transcriptomics, proteomics, and metabolomics—along with genome sequencing and editing, has greatly accelerated the development of grasspea varieties with reduced or zero ODAP content, while also enhancing the plant’s agronomic value. …”
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Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage by Bishop, Richard P., Shah, Tushaar, Pelle, Roger, Hoyle, D., Pearson, T., Haines, L., Brass, A., Hulme, H., Graham, S.P., Taracha, E.L.N., Lu, C., Hass, B., Wortman, Jennifer R., White, O., Gardner, M.J., Nene, Vishvanath M., Villiers, Etienne P. de

“…There was concordance between transcription and protein expression for heat shock proteins that were very highly expressed according to MPSS and proteomics. The data suggests a low level of baseline transcription from the majority of protein-coding genes.…”
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