Search Results - "Phylogenetics"

In silico identification of immunotherapeutic and diagnostic targets in the glycosylphosphatidylinositol metabolism of the coccidian Sarcocystis aucheniae by Decker Franco, Cecilia, Wieser, Sara Nathaly, Soria, Marcelo Abel, De Alba, Paloma, Florin-Christensen, Mónica, Schnittger, Leonhard

“…Among the latter, 13 belong to the SRS domain superfamily, an extensive group of coccidian GPI‐anchored proteins that mediate parasite interaction with their host. Phylogenetic analysis showed a great degree of intra‐ and inter‐specific divergence among SRS family proteins. …”
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Ixodes silvanus n. sp. (Acari: Ixodidae), a new member of the subgenus Trichotoixodes Reznik, 1961 from northwestern Argentina by Saracho Bottero, Maria Noelia, Beati, Lorenza, Venzal, José Manuel, Guardia Claps, Leonor, Thompson, Carolina Soledad, Mangold, Atilio Jose, Guglielmone, Alberto, Nava, Santiago

“…This new species is phylogenetically related to Ixodes brunneus, Ixodes turdus and Ixodes frontalis, and the principal hosts for all its parasitic stages are birds.…”
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Patterns and processes of mycobacterium bovis evolution revealed by phylogenomic analyses by Patané, José S.L., Martins Jr, Joaquim, Castelão, Ana Beatriz C., Nishibe, Christiane, Montera, Luciana, Bigi, Fabiana, Zumarraga, Martin Jose, Cataldi, Angel Adrian, Fonseca Junior, Antônio, Roxo, Eliana, Osório, Ana Luiza Alves Rosa, Jorge, Klaudia dos Santos Goncalves, Thacker, Tyler C., Almeida, Nalvo Franco, Araujo, Flabio Ribeiro de, Setubal, Joâo C.

“…A comparative phylogenomic study including 2,483 core genes of 38 taxa from eight countries showed conflicting phylogenetic signal among sites. By minimizing this effect, we obtained a tree that better agrees with sampling locality. …”
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Isolating microorganisms from marine and marine-associated samples : a targeted search for novel natural antibiotics by Lilja, Tua

“…Bacterial isolates (340 and counting) were recovered from the cultures, and the 16S rDNA of 96 strains was sequenced. A phylogenetic tree analysis of 91 sequences identified to the genus or species level was carried out. …”

Local and transboundary transmissions of methicillin-resistant Staphylococcus aureus sequence type 398 through pig trading by Pirolo, M., Sieber, R.N., Moodley, Arshnee, Visaggio, D., Artuso, I., Gioffrè, A., Casalinuovo, F., Spatari, G., Guardabassi, L., Stegger, M., Visca, P.

“…The analyses support the existence of two concurrent pathways for the spread of LA-MRSA ST398 in southern Italy: (i) multiple introductions of LA-MRSA ST398 through the import of colonized pigs from other European countries, including Denmark and France, and (ii) the spread of distinct clones dependent on local trading of pigs between farms. Phylogenetically related Italian and Danish LA-MRSA ST398 isolates shared extensive similarities, including carriage of antimicrobial resistance genes. …”
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A biosystematic analysis of Solanum acaule by Kardolus, J.P.

“…Solanum acaule shows morphological similarities with species of series Megristacroloba and Tuberosa , which have been hypothesized as possible ancestors. A phylogenetic study is conducted to unravel evolutionary relationships of Solanum acaule and its putative progenitors. …”
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First report of Colletotrichum cliviicola causing anthracnose disease of cowpea (Vigna unguiculata L. Walp) in Nigeria by Dada, A.O., Dania, V.O., Olaniyi, O., Abberton, Michael T., Ortega Beltran, A.

“…BLASTn results on NCBI showed 98-100% identity of the four isolates with C. cliviicola. A bi-locus phylogenetic tree revealed that the isolates belong to the species C. cliviicola (Fig. 3) when compared with existing sequences in the GenBank (Table 1). …”
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First report of potato yellowing virus (Genus Ilarvirus) in Solanum phureja from Ecuador by Silvestre, R., Untiveros, M., Cuéllar, Wilmer Jose

“…To identify the virus at the genus level, we cloned the PCR fragments (265 nucleotides) from four of the samples from Ecuador and the Peruvian isolate into plasmid vectors (pGEM-T Easy Vector cloning system; Promega, Madison, WI) for Sanger sequencing (Macrogen, Seoul, Korea). Phylogenetic analysis grouped PYV sequences with those of the genus Ilarvirus. …”
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First report of Xanthomonas euvesicatoria causing bacterial spot disease in pepper in Northwestern Nigeria by Jibrin, M.O., Timilsina, S., Potnis, N., Minsavage, G.V., Shenge, K.C., Akpa, A.D., Alegbejo, M., Beed, Fenton D., Vallad, G.E., Jones, J.B.

“…Maximum likelihood phylogenetic trees constructed for the six housekeeping gene sequences individually and in concatenation revealed that the Nigerian pepper strains were identical to the X. euvesicatoria reference strain 85-10. …”
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Morphological and molecular characterization of an Elaeis oleifera (H.B.K) Cortes germplasm collection located in Ucayali, Peru by Camacho Villalobos, Alina Alexandra, Serna Chumbes, Manuel Fernando, Flores Jaramillo, Jhoffre David, Flores, Hector, Manrique, Paulo, Bendezu, Jorge

“…Interestingly, a multiple allele background was identified within the groups using multilocus and phylogenetic relationship analyses. This is the first Peruvian report regarding E. oleifera that shows preliminary data of the morphological and yield traits and genetic data, and highlight the importance of this information to set up future steps to national breeding strategies and improve the conservation of genetic material of E. oleifera. …”
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Unlocking the Complete Chloroplast Genome of a Native Tree Species from the Amazon Basin, Capirona (Calycophyllum spruceanum Benth., Rubiaceae), and Its Comparative Analysis with O... by Saldaña Serrano, Carla Lizet, Rodriguez Grados, Pedro, Chávez Galarza, Julio César, Feijoo Narvasta, Shefferson, Guerrero Abad, Juan Carlos, Maicelo Quintana, Jorge Luis, Jhoncon, Jorge H., Arbizu Berrocal, Carlos Irvin

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Genetic diversity of 16SrIII group phytoplasmas in Argentina. Predominance of subgroups 16SrIII-J and B and two new subgroups 16SrIII-W and X by Galdeano, Ernestina, Guzman, Fabiana, Fernandez, Franco Daniel, Conci, Luis Rogelio

“…RFLP analysis performed with AluI, DraI and Tru1I (MseI isoschizomer) distinguished three new rp profiles within subgroup 16SrIII-B, one for subgroup 16SrIII-J, and one shared with strains of the new subgroups 16SrIII-W and X. The phylogenetic analysis based on 16S rDNA and ribosomal protein gene sequences confirmed the separation of HetLL and ConWB strains in two new subgroups and the close relatedness among subgroup J phytoplasmas, which have been detected only in South America.…”
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Diversity of barley yellow dwarf-associated viruses in winter cereals of Southern Sweden by Johnson, Marcelle Lauren

“…The BYDV-PAV isolates were closely related to previously recorded isolates of BYDV-PAV in Sweden, Latvia and Germany. In a phylogenetic analysis, Swedish and global BYDV-PAS isolates formed a well-supported group indicating that BYDV-PAS is a widespread virus. …”
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Nya infektiösa sjukdomar i samband med bushmeat by Ek-Terlecki, Frida

Genetisk typning av ekvint herpesvirus typ 1 (EHV-1) by Öhrmalm, Johan Wilhelm

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Molecular and pathobiological characterization of 61 Potato mop-top virus full-length cDNAs reveals great variability of the virus in the centre of potato domestication, novel geno... by Kaltandurg, Pruthvi, Gil, José Fernando, Lukhovitskaya, Nina I., Flores, Betty, Müller, Giovanna, Chuquillanqui, Carlos, Palomino Flores, Ladislao, Monjane, Aderito, Barker, Ian, Kreuze, Jan, Savenkov, Eugene I.

“…The 8K cistron, which encodes a viral suppressor of RNA silencing, was found to be under diversifying selection. Phylogenetic analysis determined that, based on the CP-RT sequence, all PMTV isolates could be categorized into three separate lineages (clades). …”
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Culturable bacteria associated with Anastrepha fraterculus sp. 1 : in search of nitrogen-fixing symbionts with biotechnological potential by Salgueiro, Julieta, Nussenbaum, Ana Laura, Marchesini, María Inés, Garbalena, Micaela Soledad, Brambilla, Silvina Maricel, Belliard, Silvina Ahnahi, Cuadros, Fabián, Núñez, Mauricio, Yáñez, Carolina, Juárez, María Laura, Vera, María Teresa, Lanzavecchia, Silvia Beatriz, Tsiamis, George, Segura, Diego Fernando

“…Gut bacteria were collected and characterized via 16S rRNA gene sequencing, with potential diazotrophs screened using selective media (SIL and NFb). Phylogenetic analysis of 16S rRNA gene mapped potential diazotrophs across the bacterial collection, while biochemical profiling and ARDRA (Amplified rDNA Restriction Analysis) were used to quickly differentiate diazotrophic bacteria. …”
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A genetic approach to the species problem in wild potato by Camadro, Elsa Lucila, Erazzu, Luis Ernesto, Maune, Juan Federico, Bedogni, Maria Cecilia

“…More recently, attempts have been made to establish phylogenetic relationships, applying molecular tools in samples of populations (accessions) with a previously assigned specific category. …”
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Candidate Gene Approach for Parasite Resistance in Sheep – Variation in Immune Pathway Genes and Association with Fecal Egg Count by Periasamy, Kathiravan, Pichler, Rudolf, Poli, Mario Andres, Cristel, Silvina Lujan, Cetra, Bibiana Maria, Medus, Pablo Daniel, Basar, Muladno, Thiruvenkadan, A.K., Ramasamy, Saravanan, Ellahi, Masroor Babbar, Mohammed, Faruque, Teneva, Atanaska, Shamsuddin, Mohammed, Garcia Podesta, Mario, Diallo, Adama

“…The mean minor allele frequency (MAF) did not vary between Asian and European sheep reflecting the absence of ascertainment bias. Phylogenetic analysis revealed two major clusters with most of South Asian, South East Asian and South West Asian breeds clustering together while European and South American sheep breeds clustered together distinctly. …”
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Babesia spp. in ticks and wildlife in different habitat types of Slovakia by Hamšíkova, Zuzana, Kazimirová, Mária, Harustiakova, Danka, Mahrikova, Lenka, Slovak, Mirko, Berthová, Lenka, Kocianova, Elena, Schnittger, Leonhard

“…Prevalence of Babesia-infected I. ricinus was higher in a natural than an urban/suburban habitat. Phylogenetic analysis showed that Babesia spp. from I. ricinus clustered with Babesia microti, Babesia venatorum, Babesia canis, Babesia capreoli/Babesia divergens, and Babesia odocoilei. …”
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