Resultados de búsqueda - "Phylogenetics"

Evolutionary analysis of tomato Sw-5 resistance-breaking isolates of Tomato spotted wilt virus por Lopez, Carmelo, Aramburu, Jose, Galipienso, Luis, Soler, Salvador, Nuez, Fernando, Rubio, Luis

“…Comparison of nucleotide and amino acid sequences suggested that tomato resistance conferred by the gene Sw-5 can be overcome by the amino acid substitution C to Y at position 118 (C118Y) or T120N in the TSWV movement protein, NSm. Phylogenetic analysis revealed that substitution C118Y has occurred independently three times in the studied isolates by convergent evolution, whereas the substitution T120N was a unique event. …”
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Integrated hepatitis e virus monitoring in central Argentina : a six-year analysis of clinical surveillance and wastewater-based epidemiology por Fantilli, Anabella Clara, Masachessi, Gisela, Di Cola, Guadalupe, Castro, Gonzalo, Sicilia, Paola, Marinzalda, María de los Angeles, Cachi, Ariana Mariela, Moreno, Claudia, Borda, Mariel, Ibarra, Gustavo, Rojas, Ricardo Manuel, Parreño, Gladys Viviana, Barbás, María Gabriela, Nates, Silvia Viviana, Pisano, María Belén, Ré, Viviana Elizabeth

“…Throughout the study period, two (4.2%) HEV confirmed infections were reported, and one sequence was obtained. Phylogenetic analyses for both genomic regions showed that all the isolates were genotype HEV-3 clade abchijklm. …”
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Evidence of natural interspecific recombinant viruses between bovine alphaherpesviruses 1 and 5 por Maidana, Silvina Soledad, Craig, Patricio Oliver, Craig, María Isabel, Ludwig, Louisa, Mauroy, Axel, Thiry, Etienne, Romera, Sonia Alejandra

“…In the phylogenetic analysis, differences of clustering were found in the UL27 gene which encodes the glycoprotein B (gB). …”
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Discovery and molecular characterization of a group A rotavirus strain detected in an Argentinean vicuña (Vicugna vicugna) por Badaracco, Alejandra, Matthijnssens, Jelle, Romero, Sandra Raquel, Heylen, Elisabeth, Zeller, Mark, Garaicoechea, Lorena Laura, Van Ranst, Marc, Parreño, Gladys Viviana

“…This relationship was confirmed phylogenetically, providing further evidence of the widespread presence of this genotype constellation in animals belonging to the artiodactyls. …”
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Evidence of a fixed internal gene constellation in influenza A viruses isolated from wild birds in Argentina (2006–2016) por Rimondi, Agustina, Gonzalez Reiche, Ana Silvia, Olivera, Valeria Soledad, Decarre, Julieta, Castresana, Gabriel Julián, Romano, Marcelo, Nelson, Martha I., van Bakel, Harm, Pereda, Ariel Julian, Ferreri, Lucas, Geiger, Ginger, Perez, Daniel Roberto

“…Remarkably and despite evidence of recent hemagglutinin and neuraminidase subtype introductions, the phylogenetic composition of internal gene constellation of these influenza A viruses has remained unchanged. …”
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Evolutionary origin and functional specialization of Dormancy‑Associated MADS box (DAM) proteins in perennial crops por Quesada-Traver, Carles, Lloret, Alba, Carretero-Paulet, Lorenzo, Badenes, María L., Ríos, Gabino

“…Results: SVP-like proteins from recently sequenced Rosaceae genomes were identifed and characterized using sequence, phylogenetic and synteny analysis tools. SVP-like proteins clustered in three clades (SVP1–3), with known DAM proteins located within SVP2 clade, which also included Arabidopsis AGAMOUS-LIKE 24 (AthAGL24). …”
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Genomic characterization of Vibrio cholerae isolated from clinical and environmental sources during the 2022–2023 cholera outbreak in Kenya por Mageto, L.M., Aboge, G.O., Mekuria, Z.H., Gathura, P., Juma, John, Mugo, M., Kebenei, C.K., Imoli, D., Ongadi, B.A., Kering, K., Mbae, C.K., Kariuki, S.

“…Whole genome sequencing was employed to characterize the genome, detect antimicrobial resistance genes, virulence factors, and mobile genetic elements. Phylogenetic analysis was performed to assess the genetic relationship and diversity of isolates from 2022 to 2023 outbreak, comparing them with isolates from historical outbreaks. …”
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Resolution of cassava-infecting alphaflexiviruses: Molecular and biological characterization of a novel group of potexviruses lacking the TGB3 gene por Lozano, Ivan, Leiva, Ana M., Jimenez, Jenyfer, Fernández Huaytalla, Elizabeth, Carvajal Yepes, Monica, Cuervo, Maritza, Cuellar, Wilmer J.

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Establishment of Babesia vulpes n. sp. (Apicomplexa: Babesiidae), a piroplasmid species pathogenic for domestic dogs por Baneth, Gad, Cardoso, Luís, Brilhante Simões, Paula, Schnittger, Leonhard

“…However, these parasite forms were overall smaller than those measured for the latter two species and no tetrad (Maltese cross) form was reported. Furthermore, phylogenetic analysis using the cytochrome c oxidase subunit 1 (COX1) amino acid sequences substantiates the species identity of this parasite as previously demonstrated based on phylogenetic analysis of the 18S rRNA and β-tubulin genes. …”
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Complete sequence and variability of a new subgroup B nepovirus infecting potato in central Peru por Souza, Joao de, Muller, G., Pérez, W., Cuéllar, Wilmer Jose, Kreuze, Jan F.

“…Sequence comparisons using the Pro-Pol region and the coat protein, including phylogenetic analysis of these regions, showed closest relationships with nepoviruses. …”
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The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae) por Arbizu Berrocal, Carlos Irvin, Ferro Mauricio, Rubén Darío, Chávez Galarza, Julio César, Guerrero Abad, Juan Carlos, Vásquez Pérez, Héctor Vladimir, Maicelo Quintana, Jorge Luis

“…Quina tree chloroplast genome possesses 135 genes that consisted of 89 protein-coding genes, 37 tRNA, eight rRNA, and one pseudogene. Phylogenetic analysis showed that C. officinalis is sister to C. pubescens and sister to them is Isertia laevis; all belong to the Cinchonoideae sub-family.…”
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Identification and characterization of a new potyvirus infecting cucurbits por Perotto, Maria Cecilia, Pozzi, Elizabeth Alicia, Celli, Marcos Giovani, Luciani, Cecilia Elizabeth, Mitidieri, Mariel Silvina, Conci, Vilma Cecilia

“…Sequence comparisons and phylogenetic analyses indicate that CVBV belongs to a previously undescribed species in genus Potyvirus.…”
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Genetic variability and evolution of broad bean wilt virus 1: role of recombination, selection and gene flow por Ferriol, Inmaculada, Ferrer, Rosa M., Luis-Arteaga, Marisol, Guerri, José, Moreno, Pedro, Rubio, Luis

“…Comparison of synonymous and nonsynonymous substitutions of the small coat protein gene (SCP) revealed negative selection for most amino acid positions. Phylogenetic analysis of SCP showed that some BBWV-1 isolates from distant geographical areas were genetically close, suggesting long-distance migration. …”
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Draft Genome Resources of Two Strains ("ESVL" and "IVIA5901") of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in Alicante, Spain por Giampetruzzi, Annalisa, Velasco-Amo, María P., Marco-Noales, Ester, Montes-Borrego, Miguel, Román-Écija, Miguel, Navarro-Herrero, Inmaculada, Monterde, Adela, Barbé, Silvia, Almeida, Rodrigo P. P., Saldarelli, Pasquale, Saponari, Maria, Montilon, Vito, Savino, Vito Nicola, Boscia, Donato, Landa, Blanca B.

“…Two cultured almond strains, "ESVL" and "IVIA5901," were subjected to high throughput sequencing and the draft genomes assembled. Phylogenetic analysis conclusively indicated they belong to the subspecies multiplex, and pairwise comparisons of the chromosomal genomes showed an average nucleotide identity higher than 99%. …”
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The complete genome sequence of a divergent grapevine virus I isolate naturally infecting grapevine in Greece por Lotos, Leonidas, Ruiz-García, Ana B., Panailidou, Polina, Olmos, Antonio, Katis, Nikolaos, Maliogka, Varvara

“…However, both sequence and phylogenetic data exhibited high levels of variability between D2-1/19 and the previously characterized GVI isolates. …”
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Genetic diversity of wild, weedy and cultivated acccessions of Brassica rapa por Crouch, J.H., Lewis, B.G., Lydiate, D.J., Mithen, R.F.

“…The implications of these results for germplasm conservation, selection of material for breeding programmes and phylogenetic studies on the origin of Brassica crops are discussed.…”
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Molecular markers and genome mapping in cowpea por Fatokun, C.A., Young, N., Myers, G.

“…Using this map, quantitative trait loci (QTLs) for seed weight, pod length, and aphid resistance have been identified. Phylogenetic relationship among 44 genotypes belonging to different varieties, species, and sections in the genus Yigna was ascertained, following RFLP analysis. …”
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Emergence of a Plant Pathogen in Europe Associated with Multiple Intercontinental Introductions por Landa, Blanca B., Castillo, Andreina I., Giampetruzzi, Annalisa, kahn, Alexandra, Román-Écija, Miguel, Velasco-Amo, María P., Navas-Cortés, Juan A., Marco-Noales, Ester, Barbé, Silvia, Moralejo, Eduardo, Coletta-Filho, Helvecio D., Saldarelli, Pasquale, Saponari, Maria, Almeida, Rodrigo P. P.

“…Our study demonstrates the need to utilize whole-genome sequence data to study X. fastidiosa introductions at outbreak stages, since a limited number of genetic markers does not provide sufficient phylogenetic resolution to determine dispersal paths or relationships among strains that are of biological and quarantine relevance.…”
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Genetic diversity and demographic history of wild yak (Bos grunniens mutus) inferred from mtDNA D-loop sequences por Zhijie, Ma, Jincheng, Zhong, Jintao, Xu, Wenlin, Bai, Jiye, Li, Dongzhi, Cairang, Xinyan, Jin, Jun, Zhang, Han Jianlin

“…Forty-five variable sites and 15 haplotypes (including three haplotypes present firstly in this study) were identified, and the nucleotide and haplotype diversities were 0.024430 ± 0.012685 and 0.9619 ± 0.0260, respectively, indicating a rich genetic diversity in wild yak. The NJ phylogenetic tree revealed two distinct lineages and the selective neutrality and mismatch distribution tests all showed no population expansion event in the demographic history of the wild yak.…”
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Lack of phylogeographic structure in Nigerian village chickens revealed by mitochondrial DNA D-loop sequence analysis por Adebambo, Ayotunde Olufunmilayo, Mobegi, V.A., Mwacharo, Joram M., Oladejo, B.M., Adewale, R.A., Iiri, L.O., Makanjuola, B.O., Afolayan, O., Bjornstad, G., Han Jianlin, Hanotte, Olivier H.

“…Thirty-six polymorphic sites which generate 35 haplotypes are identified. Phylogenetic analyses group Nigerian local chickens to a single clade and 97.8% of the total maternal variation occurs within populations. …”
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