Resultados de búsqueda - "Phylogenetics"

Complete genome sequencing and comparative phylogenomics of nine African swine fever virus (ASFV) isolates of the virulent East African p72 genotype IX without viral sequence enric... por Domelevo Entfellner, Jean-Baka, Okoth, Edward A., Onzere, C.K., Upton, C., Njau, E.P., Höper, D., Henson, Sonal P., Oyola, Samuel O., Bochere, Edwina, Machuka, Eunice M., Bishop, Richard P.

“…By contrast, Genotype IX and X genomes were strongly phylogenetically differentiated from all other ASFV genomes. …”
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Geographical distribution, host range and genetic diversity of Fusarium oxysporum f. sp. cubense causing Fusarium wilt of banana in India por Thangavelu, Raman, Amaresh, Hadimani, Gopi, Muthukathan, Loganathan, Murugan, Nithya, Boopathy, Devi, Perumal Ganga, Anuradha, Chelliah, Thirugnanavel, Anbazhagan, Patil, Kalyansing Baburao, Blomme, Guy, Selvarajan, Ramasamy

“…Isolate diversity was assessed through Vegetative Compatibility Group (VCG) analyses, sequencing of EF1α gene sequences, phylogenetic analyses, and characterisation by SIX gene composition. …”
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Analyses of mitochondrial genes reveal two sympatric but genetically divergent lineages of Rhipicephalus appendiculatus in Kenya por Kanduma, Esther G., Mwacharo, Joram M., Githaka, Naftaly W., Kinyanjui, P.W., Njuguna, J., Kamau, L.M., Kariuki, E., Mwaura, S., Skilton, Robert A., Bishop, Richard P.

“…Inclusion of previously published haplotypes in our analysis revealed a high degree of phylogenetic complexity never reported before in haplogroup A. …”
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Mitochondrial phylogeography and population structure of the cattle tick Rhipicephalus appendiculatus in the African Great Lakes region por Amzati, Gaston S., Pelle, Roger, Muhigwa, J.B., Kanduma, Esther G., Djikeng, Appolinaire, Madder, M., Kirschvink, N., Marcotty, T.

“…Phylogenetic algorithms grouped these haplotypes for both genes into two major clades (lineages A and B). …”
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Taxonomic study of Marinomonas strains isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp nov and Marinomonas pollencensis sp nov. por Espinosa, Elena, Marco-Noales, Ester, Gomez, Daniel, Lucas-Elio, Patricia, Ordax, Mónica, Garcias-Bonet, Neus, Duarte, Carlos M., Sanchez-Amat, Antonio

“…A third novel strain, IVIA-Po-185(T), was phylogenetically distant from all recognized Marinomonas species. …”
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Self-(in) compatibility in apricot germplasm is controlled by two major loci, S and M por Munoz-Sanz, Juan V., Zuriaga, Elena, López, Inmaculada, Badenes, María L., Romero, Carlos

“…Its origin is still unknown but phylogenetic analysis supports that m(0) arose later in time than S-C from a widely distributed M-haplotype. …”
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Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers por Hippolyte, I., Jenny, C., Gardes, L., Bakry, F., Rivallan, R., Pomies, V., Cubry, Philippe, Tomekpe, Kodjo, Risterucci, A.M., Roux, N., Rouard, M., Arnaud, Elizabeth, Kolesnikova-Allen, M., Perrier, Xavier

“…Highly polymorphic single sequence repeats (SSRs) are valuable markers for investigating phylogenetic relationships.…”
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Identification and molecular characterization of Orf virus in Argentina por Peralta, Andrea Veronica, Robles, Carlos Alejandro, Martinez, Agustin, Alvarez, Lucia Paula, Valera, Alejandro, Calamante, Gabriela, Konig, Guido Alberto

“…The origin and identity of Argentinian ORFVs are unknown, and no comparative or phylogenetic studies of these viruses have been performed. …”
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Characterization of the first bovine gammaherpesvirus 4 strain isolated from an aborted bovine fetus in Argentina por Romeo, Florencia, Manrique, Julieta, Perez, Sandra, Louge Uriarte, Enrique Leopoldo, Marin, Maia Solange, Canton, German Jose, Leunda, Maria Rosa, González Altamiranda, Erika, Pereyra, Susana Beatriz, Spetter, Lucas Maximiliano, Odeon, Anselmo Carlos, Jones, Leandro, Verna, Andrea Elizabeth

“…Argentinean isolates are highly diverse and are phylogenetically grouped in three genotypes. In this study, we describe the isolation of BoHV-4 from a bovine fetus with a gestational age of 8 months and without macroscopic lesions. …”
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Complete genome sequence of a new enamovirus from Argentina infecting alfalfa plants showing dwarfism symptoms por Bejerman, Nicolas Esteban, Giolitti, Fabian, Trucco, Veronica Milagros, De Breuil, Soledad, Dietzgen, Ralf Georg, Lenardon, Sergio Luis

“…Deep sequencing of diseased alfalfa plant samples from the central region of Argentina resulted in the identification of a new virus genome resembling enamoviruses in sequence and genome structure. Phylogenetic analysis suggests that it is a new member of the genus Enamovirus, family Luteoviridae. …”
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Omicron Waves in Argentina: Dynamics of SARS-CoV-2 Lineages BA.1, BA.2 and the Emerging BA.2.12.1 and BA.4/BA.5 por Torres, Carolina, Nabaes Jodar, Mercedes Soledad, Acuña, Dolores, Zambrana Montaño, Romina Micaela, Culasso, Andrés Carlos Alberto, Amadio, Ariel, Aulicino, Paula, Ceballos, Santiago, Cacciabue, Marco Polo Domingo, Debat, Humberto Julio, Dus Santos, Maria Jose, Eberhardt, María Florencia, Espul, Carlos, Fay, Fabián, Fernández, María Ailén, Fernandez, Franco Daniel, Fernandez Muñoz, Juan Manuel, Ferrini, Florencia, Gallego, Fernando, Giri, Adriana Angélica, Cerri, Agustina, Bolatti, Elisa, Gismondi, Maria Ines, Goya, Stephanie, Gramundi, Iván, Irazoqui, Jose Matias, Konig, Guido Alberto, Leiva, Viviana, Lucero, Horacio, Marquez, Nathalie, Nardi, Cristina, Ortiz, Belén, Pianciola, Luis, Pintos, Carolina Beatriz, Puebla, Andrea Fabiana, Rastellini, Carolina Victoria, Rojas, Alejandro Ezequiel, Sfalcin, Javier, Suárez, Ariel, Tittarelli, Estefanía, Toro, Rosana, Villanova, Gabriela Vanina, Ziehm, María Cecilia, Zimmermann, María Carla, Zunino, Sebastián, Proyecto PAIS Working Group, Valinotto, Laura, Viegas, Mariana

“…Molecular surveillance was performed on 3431 samples from Argentina, between EW44/2021 and EW31/2022. Sequencing, phylogenetic and phylodynamic analyses were performed. …”
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The complete genome sequence of Lamium mild mosaic virus, a member of the genus Fabavirus por Rangel, Ezequiel A., Ferriol, Inmaculada, Panno, Stefano, Davino, Salvatore, Olmos, Antonio, Rubio, Luis

“…The genome was the largest of the genus but maintained the typical organization, with RNA 1 of 6080 nucleotides (nt), RNA 2 of 4065 nt, and an unusually long 3' untranslated region in RNA 2 of 603 nt. Phylogenetic analysis of the amino acid sequences of the protease-polymerase (Pro-Pol) region and the two coat proteins confirmed that LMMV belongs to a distinct species within the genus Fabavirus.…”
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Geographically distant isolates of the persistent southern tomato virus (STV) show very low genetic diversity in the putative coat protein gene por Elvira-González, Laura, Rubio, Luis, Galipienso, Luis

“…In this work, the putative coat protein gene of worldwide STV isolates was analyzed showing very low nucleotide diversity (< 0.0100). Phylogenetic analysis separated STV isolates into two clades, but no correlation was found between genetic and geographic distances. …”
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Genetic and Transcription Profile Analysis of Tissue-Specific Anthocyanin Pigmentation in Carrot Root Phloem por Bannoud, Florencia, Carvajal, Sofía, Ellison, Shelby L., Senalik, Douglas A., Gomez Talquenca, Gonzalo, Iorizzo, Massimo, Simon, Philipp W., Cavagnaro, Pablo

“…In this work, the genetic control underlying tissue-specific anthocyanin pigmentation in the carrot root OP and IP tissues was investigated by means of linkage mapping and transcriptome (RNA-seq) and phylogenetic analyses; followed by gene expression (RT-qPCR) evaluations in two genetic backgrounds, an F2 population (3242) and the inbred B7262. …”
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Molecular detection of bovine Noroviruses in Argentinean dairy calves : circulation of a tentative new genotype por Ferragut, Fátima, Vega, Celina Guadalupe, Mauroy, Axel, Conceição-Neto, Nádia, Zeller, Mark, Heylen, Elisabeth, Louge Uriarte, Enrique Leopoldo, Bilbao, Gladys, Bok, Marina, Matthijnssens, Jelle, Thiry, Etienne, Badaracco, Alejandra, Parreño, Gladys Viviana

“…This latter strain was shown in silico to be a recombinant: phylogenetic divergence was detected between its RNA-dependent RNA polymerase coding sequence (genotype GIII.2) and its capsid protein coding sequence (genotype GIII.1 or a potential norovirus genotype). …”
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Genetic analysis of Rhipicephalus sanguineus sensu lato ticks parasites of dogs in Africa north of the Sahara based on mitochondrial DNA sequences por Chitimia-Dobler, Lidia, Langguth, Johanna, Pfeffer, Martin, Kattner, Simone, Küpper, Thomas, Friese, Daniela, Guglielmone, Alberto, Nava, Santiago

“…The other mitochondrial lineage of R. sanguineus s.l. present in Africa north of the Sahara is phylogenetically associated to R. sanguineus s.l. ticks from southeastern Europe (Romania, Turkey and Greece). …”
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The Ixodes auritulus complex (Acari: Parasitiformes: Ixodidae) in the Southern Cone of America por Venzal, José Manuel, Tarragona, Evelina Luisa, Flores, Fernando Sebastián, Félix, María L., Cicuttin, Gabriel L., Sebastian, Patrick, Labruna, Marcelo B., Guglielmone, Alberto, Nava, Santiago

“…Morphological characters were analyzed and phylogenetic analyses were performed by obtaining partial mitochondrial DNA sequences of the 16S rRNA and cox1 genes. …”
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Paenibacillus xylanivorans sp. nov., a xylan-degrading bacterium isolated from decaying forest soil por Ghio, Silvina, Sauka, Diego Hernan, Ferrari, Alejandro E., Piccinni, Florencia Elizabeth, Ontañon, Ornella Mailén, Campos, Eleonora

“…However, phylogenetic studies based on the housekeeping gyrB gene placed A59T in a separate branch from all other related type strains. …”
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Molecular characterization of novel Ehrlichia genotypes in Ixodes auritulus from Uruguay por Félix, María L., Muñoz-Leal, Sebastian, Carvalho, Luis A., Queirolo, Diego, Remesar Alonso, Susana, Nava, Santiago, Armúa-Fernández, María T., Venzal, José Manuel

“…Based on the topology of the phylogenetic trees, our sequences represent two novel genotypes for the genus named as Ehrlichia sp. …”
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Genome-wide diversity and demographic dynamics of Cameroon goats and their divergence from east African, north African, and Asian conspecifics por Mekuriaw, Getinet, Wouobeng, Patrick, Jaures, Kouam Simo, Mrode, Raphael A., Edea, Zewdu, Bin Liu, Wenguang Zhang, Okeyo Mwai, Ally, Dessie, Tadelle, Tesfaye, Kassahun, Strandberg, Erling, Berglund, Britt, Mutai, Collins, Osama, Sarah, Tassew, Asaminew, Birungi, Josephine, Djikeng, Appolinaire, Meutchieye, Felix

“…Whereas, the approximate Bayesian computation indicated Cameroon goats were separated from Moroccan goats after 506 generations in later times (~1518 YA), as supported by the phylogenetic net-work and admixture outputs. Overall, indigenous goats in Cameroon show weak phylogenetic structure, suggesting either extensive intermixing.…”
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