Search Results - "Phylogenetics"

Intraspecific variation within Castor bean (Ricinus communis L.) based on chloroplast genomes by Muraguri, S., Xu, W., Chapman, M., Muchugi, A., Oluwaniyi, A., Oyebanji, O., Liu, A.

“…These results demonstrate the genetic variations and phylogenetic relationships between the wild and cultivated lineages and add insights into the origin of cultivation and spread of castor bean.…”
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Isolation and Characterization of Intestinal Escherichia coli Clones from Wild Boars in Germany by Schierack, P., Römer, A., Jores, Joerg, Kaspar, H., Guenther, S., Filter, M., Eichberg, J., Wieler, L.H.

“…One representative isolate per clone was further investigated for virulence traits, phylogenetic affiliation, and antimicrobial susceptibility. …”
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Genetic characterization of infectious bursal disease virus isolates in Ethiopia by Jenberie, S., Lynch, Stacey E., Kebede, F., Christley, Robert M., Gelaye, E., Negussie, H., Asmare, K., Ayelet, G.

“…Ethiopian vvIBDVs are clustered phylogenetically with the African IBDV genetic lineage, independent of the Asian/European lineage. …”
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Molecular characterization of a novel cytorhabdovirus with a unique genomic organization infecting yerba mate (Ilex paraguariensis) in Argentina by Bejerman, Nicolas Esteban, Acevedo, Raúl Maximiliano, De Breuil, Soledad, Ruiz, Oscar Adolfo, Sansberro, Pedro Alfonso, Dietzgen, Ralf Georg, Nome Docampo, Claudia, Debat, Humberto Julio

“…Sequence comparisons of the encoded proteins as well as phylogenetic analysis suggest that YmVA is a new member of the genus Cytorhabdovirus, family Rhabdoviridae. …”
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Identification and molecular characterization of Orf virus infection in occupationally exposed women in South America by Peralta, Andrea Veronica, Flores Olivares, Carlos, Verna, Andrea Elizabeth, González Altamiranda, Erika, Odriozola, Ernesto Raul, Madariaga, Carolina, Odeon, Anselmo Carlos, Konig, Guido Alberto, Canton, German Jose

“…We also sequenced a sample from a Chilean human case reported in 2017, whose phylogenetic analysis showed that it groups together with other Argentine isolates from locations close to the border with Chile.…”
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Family Flexiviridae: A case study in virion and genome plasticity by Martelli, G.P., Adams, M.J., Kreuze, Jan F., Dolja, V.V.

“…Its establishment was based on similarities in virion morphology, common features in genome type and organization, and strong phylogenetic relationships between replicational and structural proteins. …”
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Target capture sequencing for the first Nigerian genotype I ASFV genome by Adeola, A.C., Luka, P.D., Xiang-Xiang Jiang, Zheng-Fei Cai, Oluwole, O.O., Xian Shi, Oladele, B.M., Olorungbounmi, T.O., Boladuro, B., Omotosho, O., Okoro, V.M.O., Dawuda, P.M., Olaogun, S.C., Sanke, O.J., Hai-Bing Xie, Bishop, Richard P., Jianlin Han, Jianbo Li, Ya-Ping Zhang, Min-Sheng Peng

“…Phylogenetic analysis of ASFV whole genomes highlights virus origins and evolution in greater depth. …”
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Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR. by Tan, Zhiyuan, Hurek, Thomas, Vinuesa, Pablo, Müller, Peter, Ladha, Jagdish K., Reinhold-Hurek, Barbara

“…In addition to analyzing their phylogenetic positions, we assessed the suitability of the 16S-23S ribosomal DNA (rDNA) intergenic spacer (IGS) sequences for the differentiation of closely related rhizobial taxa and for the development of PCR protocols allowing the specific detection of strains in the environment. 16S rDNA sequence analysis (sequence identity, 99%) and phylogenetic analysis of IGS sequences showed that strain IRBG271 was related to but distinct from Bradyrhizobium elkanii . …”
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Next generation haplotyping to decipher nuclear genomic interspecific admixture in Citrus species: analysis of chromosome 2 by Curk, Franck, Ancillo, Gema, García-Lor, Andrés, Luro, Francois, Perrier, Xavier, Jacquemoud-Collet, Jean-Pierre, Navarro, Luis, Ollitrault, Patrick

“…Haplotypes were established from the reads of each accession and phylogenetic analyses were performed using the haplotypic data for each gene fragment. …”
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From the popular tRNAleu-COX2 intergenic region to the mitogenome: insights from diverse honey bee populations of Europe and North Africa by Henriques, Dora, Chávez Galarza, Julio César, Quaresma, Andreia, Neves, Cátia José, Lopes, Ana Rita, Costa, Cecília, Costa, Filipe O., Rufino, José, Pinto, María Alice

“…This allowed generating a comprehensive dataset to investigate the phylogenetic and phylogeographic congruence among the mitogenome, individual genes, and the tRNAleu-COX2 region. …”
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Species occurrence of ticks in South America, and interactions with biotic and abiotic traits by Estrada-Peña, Agustín, Nava, Santiago, Tarragona, Evelina Luisa, Bermúdez, Sergio, de la Fuente, José, Domingos, Ana, Labruna, Marcelo B., Mosqueda, Juan, Merino, Octavio, Szabó, Matías P.J., Venzal, José Manuel, Guglielmone, Alberto

“…The datasets of records of the distribution of ticks and their hosts are invaluable tools to understand the phylogenetic patterns of evolution of ticks and the abiotic traits to which they are associated. …”
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Discovery and characterization of sweetpotato’s closest tetraploid by Muñoz Rodríguez, P., Wells, T., Wood, J.R.I., Carruthers, T., Anglin, N.L, Jarret, Robert L., Scotland, R.W.

“…We integrate morphological, phylogenetic, and genomic analyses of herbarium and germplasm accessions of the hexaploid sweetpotato, its closest known diploid relative Ipomoea trifida, and various tetraploid plants closely related to them from across the American continent. …”
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Analysis of genetic diversity and relationships in East African banana germplasm by Pillay, M., Ogundiwin, E., Nwakanma, D., Ude, G., Tenkouano, A.

“…The genetic diversity and phylogenetic relationships of 29 East African highland banana (Musa spp.) cultivars and two outgroup taxa, M. acuminata Calcutta 4 and Agbagba were surveyed by RAPD analysis. …”
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Identification, Sequencing and Genetic Diversity of Zucchini Tigre Mosaic Virus Infecting Cucurbita Species in Argentina by Brugo Carivali, María Florencia, Luciani, Cecilia Elizabeth, Celli, Marcos Giovani, Olmos, Sofía Eugenia, Obregon, Veronica Gabriela, Silva, Milagros Itatí, Fernandez, Franco Daniel, Cabrera Mederos, Dariel, Perotto, Maria Cecilia

“…Eighteen coat protein (CP) sequences and one complete genome sequence were obtained. Phylogenetically, the new Argentine isolates formed their own clade separated from all other ZTMV isolates. …”
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Evolutionary relationship and population structure of domestic Bovidae animals based on MHC-linked and neutral autosomal microsatellite markers by Guang-Xin, E., Li-Peng Chen, Dong-Ke Zhou, Bai-Gao Yang, Jia-Hua Zhang, Yong-Ju Zhao, Qiong-Hua Hong, Yue-Hui Ma, Ming-Xing Chu, Lu-Pei Zhang, Wang-Dui Basang, Yan-Bin Zhu, Yan-Guo Han, Ri-Su Na, Yan Zeng, Zhong-Quan Zhao, Yong-Fu Huang, Han Jianlin

“…Here, we examined the diversity and phylogenetic pattern of MHC haplotypes reconstructed using three MHC-linked microsatellite markers in 55 populations of five Bovidae species and compared them with those based on neutral autosomal microsatellite markers (NAMs). …”
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The aconitate hydratase family from Citrus by Terol, Javier, Soler, Guillermo, Talón, Manuel, Cercós, Manuel

“…In this work, the citrus aconitase gene family was first characterized and a phylogenetic analysis was then carried out in order to understand the evolutionary history of this family in plants. …”
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New insights into the molecular phylogeny, biogeographical history, and diversification of Amblyomma ticks (Acari: Ixodidae) based on mitogenomes and nuclear sequences by Uribe, Juan E., Kelava, Samuel, Nava, Santiago, Cotes-Perdomo, Andrea P., Castro, Lyda R., Rivera-Paéz, Fredy A., Perea, Silvia, Mans, Ben J., Gofton, Alexander, Teo, Ernest J.M., Zardoya, Rafael, Barker, Stephen C.

“…However, a stable phylogenetic framework of Amblyomma for a better understanding of the biogeographic patterns underpinning its diversification is lacking. …”
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Rickettsia spp., Ehrlichia sp. and Candidatus Midichloria sp. associated to ticks from a protected urban area in Buenos Aires City (Argentina) by Cicuttin, Gabriel L., De Salvo, María Nazarena, Venzal, José Manuel, Nava, Santiago

“…The sequences obtained from A. aureolatum were phylogenetically related to Midichloriaceae endosymbionts. …”
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Genetic characterization of bovine herpesvirus 4 (BoHV-4) isolates from Argentine cattle suggests a complex evolutionary scenario by Perez, Sandra, Manrique, Julieta, Moran, Pedro, Romeo, Florencia, Angelini, Hernán Pablo, Leunda, Maria Rosa, Pereyra, Susana Beatriz, Spetter, Lucas Maximiliano, Gonzalez Altamiranda, Erika, Odeon, Anselmo Carlos, Jones, Leandro, Verna, Andrea Elizabeth

“…According to thymidine kinase (tk) gene sequences, BoHV-4 isolates belong to genotypes 1, 2 and 3. Phylogenetic analyses confirmed the presence of the three previously described viral genotypes. …”
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Complete plastome assemblies from a panel of 13 diverse potato taxa by Achakkagari, S.R., Kyriakidou, M., Tai, H.H., Anglin, Noelle L., Ellis, David, Stromvik, M.V.

“…The chloroplasts are a crucial part of photosynthesizing plant cells and are extensively utilized in phylogenetic studies mainly due to their maternal inheritance. …”
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