Search Results - "Oryza sativa"

Analysis of population structure and genetic diversity reveals gene flow and geographic patterns in cultivated rice (O. sativa and O. glaberrima) in West Africa by Yelome, O.I., Audenaert, K., Landschoot, S., Dansi, A., Vanhove, W., Silué, D., Damme, P. van, Haes, G.

“…Germplasm structure showed that Oryza sativa accessions were not totally isolated from Oryza glaberrima accessions. …”
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Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions by Selvaraj, Michael Gomez, Jan, Asad, Ishizaki, Takuma, Valencia Ortiz, Milton Orlando, Dedicova, Beata, Maruyama, Kyonoshin, Ogata, Takuya, Todaka, Daisuke, Yamaguchi-Shinozaki, Kazuko, Nakashima, Kazuo, Ishitani, Manabu

“…In this study, we report that Oryza sativa CCCH‐tandem zinc finger protein 5 (OsTZF5) can confer drought resistance and increase grain yield in transgenic rice plants. …”
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Evaluation of some rice genotypes for incidence of African rice gall midge and its parasitoid (P. Diplosisae) by Ogah, E.O., Odebiyi, J.A., Omoloye, A.A., Nwilene, F.E.

“…Three major rice genotypes (Oryza sativa, Oryza glaberrima and interspecific rice, New Rice for Africa (NERICA)) are cultivated in Nigeria. …”
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Performance of a model in simulating growth and stability for cassava grown after rice by Sawatraksa, Nateetip, Banterng, Poramate, Jogloy, Sanun, Vorasoot, Nimitr, Moreno Cadena, Leidy Patricia, Hoogenboom, Gerrit

“…Selecting the appropriate genotype for growing cassava (Manihot esculenta Crantz) after rice (Oryza sativa L.) can help increase the supply of cassava and improve land use efficiency. …”
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Does use of unbordered plots affect estimation of upland rice yield? by Saito, Kazuki, Dieng, I., Vandamme, Elke, Johnson, J.M., Futakuchi, K.

“…Four field experiments were conducted in Benin to examine whether grain yields of 14 diverse upland rice (Oryza sativa spp.) varieties determined in unbordered one‐row or two‐row plots differ from those measured in self‐bordered four‐row plots and to examine if statistical models including covariates based on plant characteristics (height, panicle number, and days to heading) for correcting competition effect can improve the estimation of the yield in unbordered plots. …”
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Rice yellow mottle virus in rice in Rwanda: first report and evidence of strain circulation by Ndikumana, I., Gasoré, R., Issaka, S., Pinel Galzi, A., Onasanya, A., Hassani‐Mehraban, A., Fargette, D., Peters, D., Séré, Y.

“…Rice yellow mottle virus (RYMV), of the genus Sobemovirus, has a narrow host range restricted to wild and cultivated rice (Oryza sativa and O. glaberrima) and a few other poaceous species (Bakker, 1974). …”
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Impact of early genomic prediction for recurrent selection in an upland rice synthetic population by Baertschi, Cédric, Cao, Tuong-Vi, Bartholomé, Jérôme, Ospina Rey, Yolima, Quintero, Constanza, Frouin, Julien, Bouvet, Jean-M., Grenier, Cécile

“…The objective of this study was to optimize early genomic prediction in an upland rice (Oryza sativa L.) synthetic population improved through recurrent selection via shuttle breeding in two sites. …”
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Receptor-like Kinases (LRR-RLKs) in response of plants to biotic and abiotic stresses by Soltabayeva, A., Dauletova, N., Serik, S., Sandybek, M., Omondi, J.O., Kurmanbayeva, A., Srivastava, S.

“…This has been mostly studied in the model plant, Arabidopsis thaliana, and to some extent in other plants, such as Solanum lycopersicum, Nicotiana benthamiana, Brassica napus, Oryza sativa, Triticum aestivum, Hordeum vulgare, Brachypodium distachyon, Medicago truncatula, Gossypium barbadense, Phaseolus vulgaris, Solanum tuberosum, and Malus robusta. …”
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Breeding and Cereal Yield Progress by Fischer, R.A., Edmeades, Gregory O.

“…This paper reviews recent progress in wheat (Triticum aestivum L.), rice (Oryza sativa L.), and maize (Zea mays L.) yields resulting from substantial breeding efforts in mostly favorable environments and examines its physiological basis. …”
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Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions by Prasad C.T., Manjunath, Kodde, Jan, Angenent, Gerco C., Hay, Fiona R., McNally, Kenneth L., Groot, Steven P.C.

“…This study aims to identify these genetic factors determining the longevity of rice (Oryza sativa L.) seeds stored under experimental aging conditions mimicking long-term dry storage. …”
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Evaluation of genotypic variability and analysis of yield and its components in irrigated rice to stabilize yields in the Senegal river valley affected by climate change by Moukoumbi, Y.D., Bayendi Loudit, S.M., Sikirou, M., Mboj, D., Hussain, T., Bocco, R., Manneh, B.

“…During the dry season of 2013–2014, 300 irrigated high yielding oryza sativa indica panel were used in an Alpha-lattice experiment at the Ndiaye research station in Senegal. …”
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Meta-analysis of rice phosphoproteomics data to understand variation in cell signaling across the rice pan-genome by Ramsbottom, Kerry A., Prakash, Ananth, Perez-Riverol, Yasset, Camacho, Oscar Martin, Sun, Zhi, Kundu, Deepti J., Bowler-Barnett, Emily, Martin, Maria, Fan, Jun, Chebotarov, Dmytro, McNally, Kenneth L., Deutsch, Eric W., Vizcaíno, Juan Antonio, Jones, Andrew R.

“…In this study, we have reanalyzed publicly available mass spectrometry proteomics data sets enriched for phosphopeptides from Asian rice (Oryza sativa). In total we identified 15,565 phosphosites on serine, threonine, and tyrosine residues on rice proteins. …”
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Identification of reliable QTLs and designed QTL breeding for grain shape and milling quality in the reciprocal introgression lines in rice by Emelin, Mwenda, Qiu, Xianjin, Fan, Fangjun, Alamin, Md., Faruquee, Muhiuddin, Hu, Hui, Xu, Junying, Yang, Jie, Xu, Haiming, Ali, Jauhar, Liu, Bailong, Shi, Yumin, Li, Zhikang, Zhang, Luyan, Zheng, Tianqing, Xu, Jianlong

“…Milling quality (MQ) and grain shape (GS) of rice (Oryza sativa L.) are correlated traits, both determine farmers’ final profit. …”
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Genetic mapping of the root mycobiota in rice and its role in drought tolerance by Andreo-Jimenez, Beatriz, te Beest, Dennis E., Kruijer, Willem, Vannier, Nathan, Kadam, Niteen N., Melandri, Giovanni, Jagadish, Krishna S.V., van der Linden, Gerard, Ruyter-Spira, Carolien, Vandenkoornhuyse, Philippe, Bouwmeester, Harro J.

“…For this purpose, the composition of the root mycobiota was characterized in 296 rice accessions (Oryza sativa L. subsp. indica) under control and drought conditions. …”
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Strong genotype by environment interactions in the rice Global MAGIC population across seedling stage drought by Moyers, Brook T., Henry, Amelia, Raghavan, Chitra, Zaw, Hein, Marrano, Annarita, Leung, Hei, McKay, John

“…We used the diverse Oryza sativa Global Multiparent Advanced Generation InterCross (MAGIC) population to study the genetic architecture and contributions of seedling emergence, establishment, and development to yield components under dry-direct seeding and seedling stage drought across three growing seasons. …”
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Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems by Groen, Simon C., Joly-Lopez, Zoé, Platts, Adrian E., Natividad, Mignon, Fresquez, Zoë, Mauck, William M., Quintana, Marinell R., Cabral, Carlo Leo U., Torres, Rolando O., Satija, Rahul, Purugganan, Michael D., Henry, Amelia

“…Rice (Oryza sativa) was domesticated around 10,000 years ago and has developed into a staple for half of humanity. …”
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Salt resistance of interspecific crosses of domesticated and wild rice species by Wairich, Andriele, Wember, Louisa Sophie, Gassama, Lamin J., Wu, Lin-Bo, Murugaiyan, Varunseelan, Ricachenevsky, Felipe Klein, Margis-Pinheiro, Marcia, Frei, Michael

“…alt stress negatively affects rice growth and yield in many parts of the world. Cultivated rice (Oryza sativa L.) is very sensitive to salt stress. Breeding attempts to develop salinity‐adapted rice varieties have been hampered by the quantitative nature of adaptation and limited genetic variability in cultivated rice.AimsWe aimed to explore the potential of wild rice species for improving adaptation to salinity. …”
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Mapping of a major QTL, qBK1Z, for bakanae disease resistance in rice by Lee, Sais-Beul, Kim, Namgyu, Jo, Sumin, Hur, Yeon-Jae, Lee, Ji-Youn, Cho, Jun-Hyeon, Lee, Jong-Hee, Kang, Ju-Won, Song, You-Chun, Bombay, Maurene, Kim, Sung-Ryul, Lee, Jungkwan, Seo, Young-Su, Ko, Jong-Min, Park, Dong-Soo

“…Bakanae disease is a fungal disease of rice (Oryza sativa L.) caused by the pathogen Gibberella fujikuroi (also known as Fusarium fujikuroi). …”
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A GWAS approach to find SNPs associated with salt removal in rice leaf sheath by Neang, Sarin, de Ocampo, Marjorie, Egdane, James A., Platten, John Damien, Ismail, Abdelbagi M., Seki, Masahide, Suzuki, Yutaka, Skoulding, Nicola Stephanie, Kano-Nakata, Mana, Yamauchi, Akira, Mitsuya, Shiro

“…We report a genome-wide association study (GWAS) conducted to find single nucleotide polymorphisms (SNPs) associated with salt removal in leaf sheaths of rice.MethodsIn this study, 296 accessions of a rice (Oryza sativa) diversity panel were used to identify salt removal-related traits and conduct GWAS using 36 901 SNPs. …”
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Machine learning reveals spatiotemporal genome evolution in Asian rice domestication by Ohyanagi, Hajime, Goto, Kosuke, Negrão, Sónia, Wing, Rod A., Tester, Mark A., McNally, Kenneth L., Bajic, Vladimir B., Mineta, Katsuhiko, Gojobori, Takashi

“…With the aim of understanding the long-term domestication process of Asian rice and by employing the Oryza sativa subspecies (indica and japonica) as an Asian rice domestication model, we scrutinized past genomic introgressions between them as traces of domestication. …”
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