Search Results - "Genomics"

Genome-wide association study uncovers genomic regions associated with grain iron, zinc and protein content in pearl millet by Pujar, Mahesh, Gangaprasad, S., Govindaraj, Mahalingam, Gangurde, Sunil S., Kanatti, A., Kudapa, Himabindu

“…The SNPs/genes identified in the present study presents prospects for genomics assisted biofortification breeding in pearl millet.…”
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Genome-wide BAC-end sequencing of Musa acuminata DH Pahang reveals further insights into the genome organization of banana by Arango, R.E., Togawa, R.C., Carpentier, Sebastien C., Roux, N., Hekkert, B.L., Kema, G.H.J., Souza, M. de

Subjects: “…genomes…”
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Draft genome assembly and bioinformatic analysis of a denovo sequenced genome of Treponema phagedenis like strain V1 by Mushtaq, Mamoona

“…In this study, a draft genome assembly of Treponema phagedenis-like strain V1 was obtained using Mira3 assembler. …”
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Advances in molecular genetics and genomics of African rice (Oryza glaberrima Steud) by Wambugu, P.W., Ndjiondjop, M.N., Henry, R.

Subjects: “…genomes…”
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Reproductive technology group: cellular resources, functional genomics tools and biotechnologies by Tiambo, Christian K.

Subjects: “…genomics…”
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Vitamin K in human health and metabolism: A nutri-genomics review by Rajagopal, Shalini, Gupta, Ayam, Parveen, Rabia, Shukla, Nidhi, Bhattacharya, Sanghati, Naravula, Jalaja, Kumar S, Anil, Mathur, Praveen, Simlot, Anita, Mehta, Sudhir, Bihari, Chhagan, Mehta, Sumita, Mishra, Ashwani Kumar, Nair, Bipin G., Medicherla, Krishna Mohan, Reddy, G. Bhanuprakash, Sreenivasulu, Nese, Kishor, P.B. Kavi, Suravajhala, Prashanth

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EnvRtype: a software to interplay enviromics and quantitative genomics in agriculture by Costa-Neto, Germano, Galli, Giovanni, Carvalho, Humberto Fanelli, Crossa, José, Fritsche-Neto, Roberto

“…Here, we introduce the EnvRtype R package, a novel toolkit developed to interplay large-scale envirotyping data (enviromics) into quantitative genomics. To start a user-friendly envirotyping pipeline, this package offers: (1) remote sensing tools for collecting (get_weather and extract_GIS functions) and processing ecophysiological variables (processWTH function) from raw environmental data at single locations or worldwide; (2) environmental characterization by typing environments and profiling descriptors of environmental quality (env_typing function), in addition to gathering environmental covariables as quantitative descriptors for predictive purposes (W_matrix function); and (3) identification of environmental similarity that can be used as an enviromic-based kernel (env_typing function) in whole-genome prediction (GP), aimed at increasing ecophysiological knowledge in genomic best-unbiased predictions (GBLUP) and emulating reaction norm effects (get_kernel and kernel_model functions). …”
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Genomics-based precision breeding approaches to improve drought tolerance in rice by Swamy, B.P. Mallikarjuna, Kumar, Arvind

Subjects: “…functional genomics…”
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Application of Genomics in Supporting Efficient Conservation and Utilization of Plant Genetic Resources by Wambugu, P.W., Ndjiondjop, M.N., Rangan, P., Henry, R. J.

Subjects: “…genomics…”
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Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics by Arensburger, P., Megy, K., Waterhouse, Robert M., Abrudan, J., Amedeo, P., Antelo, B., Bartholomay, L., Bidwell, S., Caler, E., Camara, F., Campbell, C.L., Campbell, K.S., Casola, C., Castro, M.T., Chandramouliswaran, I., Chapman, S.B., Christley, S., Costas, J., Eisenstadt, E., Feschotte, C., Fraser-Liggett, C.M., Guigo, R., Haas, B., Hammond, M., Hansson, B.S., Hemingway, J., Hill, S.R., Howarth, C., Ignell, R., Kennedy, R.C., Kodira, C.D., Lobo, N.F., Mao, C., Mayhew, G., Michel, K., Mori, A., Liu, N., Naveira, H., Nene, Vishvanath M.

“…Here, we describe the genomic sequence of C. quinquefasciatus: Its repertoire of 18,883 protein-coding genes is 22% larger than that of Aedes aegypti and 52% larger than that of Anopheles gambiae with multiple gene-family expansions, including olfactory and gustatory receptors, salivary gland genes, and genes associated with xenobiotic detoxification.…”
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Opportunities for bridging the gap between genomics and genetic improvement in Musa spp by Roux, N., Rouard, M., Huang, X.L., Smith, M.

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RIKEN Cassava Initiative: establishment of a cassava functional genomics platform by Utsumi, Yoshinori, Sakurai, T., Umemura, Yoshimi, Ayling, Sarah, Ishitani, Manabu, Narangajavana, J, Sojikul, P, Triwitayakorn, Kanokporn, Matsui, M, Manabe, R, Shinozaki, Kazuo, Seki, M.

Subjects: “…genomics…”
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GreenPhylDB: phylogenomic resources for comparative and functional genomics in plants by Rouard, M., Guignon, Valentin, Walde, C., Droc, Gaëtan, Zmasek, C., Dufayard, Jean-François, Conte, M.G.

Subjects: “…genomes…”
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Better beans through genomics: Accelerating Rwandan breeding with molecular markers by International Livestock Research Institute

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Global agricultural intensification during climate change: a role for genomics by Abberton, Michael T., Batley, J., Bentley, A., Bryant, J., Cai, H., Cockram, J., Costa de Oliveira, A., Cseke, L.J., Dempewolf, Hannes, Pace, C. de, Edwards, D., Gepts, Paul L., Greenland, A., Hall, A.E., Henry, R., Hori, K., Howe, G.T., Hughes, S., Humphreys, M.W., Lightfoot, D., Marshall, A., Mayes, S., Nguyen, H.T., Ogbonnaya, F.C., Ortíz, R., Paterson, A.H, Tuberosa, R., Valliyodan, B., Varshney, Rajeev K., Yano, M.

“…Here we review the state of the art of genomic‐assisted breeding for the most important staples that feed the world, and how to use and adapt such genomic tools to accelerate development of both major and minor crops with desired traits that enhance adaptation to, or mitigate the effects of climate change.…”
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The Tropical Dairy Genomics Program of the Centre for Tropical Livestock Genetics and Health by Marshall, Karen

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Use of advanced genomics in determining appropriate breed types for smallholder dairy by Mujibi, F.D.N.

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IPM-omics: from genomics to extension for integrated pest management of cowpea by Agunbiade, T.A., Steele, L., Coates, B., Gassmann, A., Margam, V., Ba, Malick N., Dabiré-Binso, C., Baoua, I., Bello-Bravo, Julia, Seufferheld, F., Sun, W., Tamò, Manuele, Pittendrigh, Barry Robert

Subjects: “…genomics…”
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Constructing linkage maps in the genomics era with MapDisto 2.0 by Heffelfinger, Christopher, Fragoso, Christopher A., Lorieux, Mathias

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The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics by Cooper, Laurel D., Meier, A., Laporte, Marie-Angélique, Elser, J.L., Mungall, C., Sinn, B.T., Cavaliere, D., Carbon, S., Dunn, N.A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkouto, G., Doonan, J.H., Stevenson, D.W., Arnaud, Elizabeth, Jaiswal, P.

“…Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. …”
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