Search Results - Protein evolution

Concerted evolution at a multicopy locus in the protozoan parasite Theileria parva: Extreme divergence of potential protein-coding sequences by Bishop, Richard P., Musoke, A.J., Morzaria, S.P., Sohanpal, B.K., Gobright, E.I.

“…The probe sequences were, however, protein coding accoring to predictive algorithms and codon usage. …”
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Geographically distant isolates of the persistent southern tomato virus (STV) show very low genetic diversity in the putative coat protein gene by Elvira-González, Laura, Rubio, Luis, Galipienso, Luis

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Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the PHOSPHATE TRANSPORTER1 gene family by Yang, Shu-Yi, Grønlund, Mette, Jakobsen, Iver, Grotemeyer, Marianne Suter, Rentsch, Doris, Miyao, Akio, Hirochika, Hirohiko, Kumar, Chellian Santhosh, Sundaresan, Venkatesan, Salamin, Nicolas, Catausan, Sheryl, Mattes, Nicolas, Heuer, Sigrid, Paszkowski, Uta

Subjects: “…evolution…”
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Evolutionary origin and functional specialization of Dormancy‑Associated MADS box (DAM) proteins in perennial crops by Quesada-Traver, Carles, Lloret, Alba, Carretero-Paulet, Lorenzo, Badenes, María L., Ríos, Gabino

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Perspectives in Myrtaceae evolution from plastomes and nuclear phylogenies by Balbinott, Natalia, Ferreira Rodrigues, Nureyev, Guzman Escuredo, Frank Lino, Turchetto Zolet, Andreia Carina, Margis, Rogerio

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Shaping the biology of citrus: I. Genomic determinants of evolution by González-Ibeas, Daniel, Ibanez, Victoria, Pérez-Román, Estela, Borredá, Carles, Terol, Javier, Talón, Manuel

“…Other gene types under positive selection, expanded through tandem duplications and retained as triplets from whole genome duplications, codified for purple acid phosphatases and MATE-efflux proteins. Although speciation has not been especially rapid in the genus, analyses of selective pressure at the codon level revealed that the extant species evolved from the ancestral citrus radiation show signatures of pervasive adaptive evolution and is therefore potentially responsible for the vast phenotypic differences observed among current species.…”
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Trapping parasite secretory proteins in baker's yeast by Nene, Vishvanath M., Bishop, Richard P.

“…Because the function of signal sequences has been conserved during evolution it has been possible to develop both bioinformatics resources to identify them and techniques to clone genes that encode secretary proteins. …”
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Evolutionary analyses of GRAS transcription factors in angiosperms by Cenci, A., Rouard, M.

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Sequence characterization of a Peruvian isolate of sweet potato chlorotic stunt virus: Further variability and a model for p22 acquisition by Cuéllar, Wilmer Jose, Cruzado, R., Fuentes, S., Untiveros, M., Soto, M., Kreuze, Jan F.

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Whole genome sequencing of a banana wild relative Musa itinerans provides insights into lineage-specific diversification of the Musa genus by Wu, W., Yang, Y.L., He, W.M., Rouard, M., Li, W.M., Xu, M., Roux, N., Ge, X.J.

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Understanding the intracellular-to-extracellular localization switch of polyhydroxybutyrate polymerase in pseudomonas backgrounds as a microevolutionary process by Stritzler, Margarita, Berini, Carolina Andrea, Jozefkowicz, Cintia, Soto, Gabriela Cinthia, Ayub, Nicolás Daniel

“…This gradual evolution includes several adaptive and pre-adaptive changes at the genomic, genetic and enzymatic levels, which are intimately related to the lifestyle of organisms during the evolution of protein localization. …”
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Next generation sequencing and genetic analyses reveal factors driving evolution of sweetpotato viruses in Uganda by Adero, Joanne, Wokorach, G., Stomeo, Francesca, Yao, Nasser, Machuka, Eunice, Njuguna, Joyce, Byarugaba, D.K., Kreuze, J., Yencho, G.C., Otema, M.A., Yada, B., Kitavi, M.

“…Phylogenetic analyses demonstrated that some viruses have evolved to form new phylogroups, likely due to high mutations and recombination, particularly in the coat protein, P1 protein, cylindrical inclusion, and helper component proteinase regions of the potyvirus. …”
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Evolution of Animal South American RVA Told by the NSP4 Gene E12 Genotype by Miño, Samuel, Badaracco, Alejandra, Louge Uriarte, Enrique Leopoldo, Ciarlet, Max, Parreño, Viviana

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Selective pressure against horizontally acquired prokaryotic genes as a driving force of plastid evolution by Llorente, Briardo, de Souza, Flavio S. J., Soto, Gabriela Cynthia, Meyer, Cristian, Alonso, Guillermo D., Flawia, Mirtha M., Bravo Almonacid, Fernando Felix, Ayub, Nicolás Daniel, Rodríguez-Concepción, Manuel

“…Markedly, a deleterious effect on plant growth was highly correlated with PPO activity only when producing the non-targeted enzyme, suggesting that selection favoured the fixation of plastid-targeted protein versions. Our results reveal a possible evolutionary mechanism of how selection against heterologous genes encoding cytosolic proteins contributed in incrementing plastid proteome complexity from non-endosymbiotic gene sources, a process that may also impact mitochondrial evolution.…”
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Comparative transcriptome profile analysis of rice varieties with different tolerance to zinc deficiency by Lu, X., Liu, S., Zhi, S., Chen, J., Ye, G.

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Evolutionary insights into FYVE and PHOX effector proteins from the moss Physcomitrella patens by Agudelo Romero, Patricia, Margarida Fortes, Ana, Suárez, Trinidad, Lascano, Hernan Ramiro, Saavedra, Laura

“…Phylogenetic analysis showed that PpFYVE proteins can be grouped in 7 subclasses, with an additional subclass whose FYVE domain was lost during evolution to higher plants. …”
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Genetic variability and evolution of broad bean wilt virus 1: role of recombination, selection and gene flow by Ferriol, Inmaculada, Ferrer, Rosa M., Luis-Arteaga, Marisol, Guerri, José, Moreno, Pedro, Rubio, Luis

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Alternative Oxidase (AOX) Genes of African Trypanosomes: Phylogeny and Evolution of AOX and Plastid Terminal Oxidase families by Suzuki, T., Hashimoto, T., Yabu, Y., Majiwa, Phelix A.O., Ohshima, S., Suzuki, M., Lu, S., Hato, M., Kido, Y., Sakamoto, K., Nakamura, K., Kita, K., Ohta, N.

“…To clarify evolution and phylogenetic relationships of trypanosome alternative oxidase (AOX) molecules, AOX genes (cDNAs) of the African trypanosomes, Trypanosoma congolense and Trypanosoma evansi, were cloned by PCR. …”
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Genetic structure and evolution of natural populations of viruses causing the tomato yellow leaf curl disease in Spain by Font-San-Ambrosio, Isabel, Rubio, Luis, Martinez-Culebras, Pedro Vicente, Jordá, Concepción

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Functional evolution of the colony‐stimulating factor 1 receptor (CSF1R) and its ligands in birds by Hume, D.A., Gutowska‐Ding, M.W., Garcia‐Morales, C., Kebede, A., Bamidele, Oladeji, Trujillo, A.V., Gheyas, Almas A., Smith, J.

“…The functions of CSF1R and both ligands are conserved in birds. We have analyzed protein-coding sequence divergence among avian species. …”
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