Search Results - Computers. bioinformatics.

Research Computing at ILRI: brief overview of HPC resources for genomics by Orth, Alan S.

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A computational study of the interaction of the foot and mouth disease virus VP1 with monoclonal antibodies by Marrero Diaz De Villegas, Rubén, Rodríguez Limardo, Ramiro, Carrillo, Elisa Cristina, Konig, Guido Alberto, Turjanski, Adrián G.

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Developing a bioinformatics pipeline for Urochloa spp. mapping population: from RAD sequencing data to identification of QTL for spittlebug resistance by Espitia, Paula A., Hernández, Luis Miguel, Ryan, Camilla, Vega, Jose J. de, Jauregui, Rosa

Subjects: “…computer software…”
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Bioinformatics for plant genetics and breeding research by Naik, Y.D., Zhao, C., Channale, S., Nayak, S.N., Bhutia, K.L., Gautam, A., Kumar, R., Niranjan, V., Shah, T.M., Mott, R., Punnuri, S., Pandey, M.K., Wang, X., Varshney, R.K., Thudi, M.

“…In this chapter, we review the intervention of bioinformatics and computational tools for deploying the tremendous wealth of data for plant genetics and breeding research.…”
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Why and how to set up a Bioinformatics Learning Lab (BILL) by Fiston-Lavier, Anna-Sophie, Cherif, Emira, Tilak, Marie-ka, Soulier, Arnaud, Breton, Catherine, Boureux, Anthony, Costa, Remy, Miahle, Xavier, Chenal, Clothilde, Schatt, Floris, Sennaoui, Camelia, Avarre, Jean-Christophe, Gosselin-Grenet, Anne-Sophie

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The eBioKit, a stand-alone educational platform for bioinformatics by Hernández-de-Diego, Rafael, Villiers, Etienne P. de, Klingström, Tomas, Gourlé, Hadrien, Conesa, Ana, Bongcam-Rudloff, Erik

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EpiCass and CassavaNet4Dev advanced bioinformatics workshop by Gisel, A., Stavolone, L., Olagunju, T., Landi, M., Damme, R. van, Niazi, A., Falquet, L., Shah, T., Bongcam-Rudloff, E.

“…The first advanced bioinformatics training workshop took place from May 16th to May 18th, 2022, followed by an online mini-symposium titled "Epigenetics and crop improvement" on May 19th. …”
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Arabidopsis research in 2030: Translating the computable plant by Brady, Siobhan, Auge, Gabriela, Ayalew, Mentewab, Balasubramanian, Sureshkumar, Hamann, Thorsten, Inze, Dirk, Saito, Kazuki, Brychkova, Galina, Berardini, Tanya Z., Friesner, Joanna, Ho, Cheng-Hsun, Hauser, Marie-Theres, Kobayashi, Masatomo, Lepiniec, Loic, Mahonen, Ari Pekka, Mutwil, Marek, May, Sean, Parry, Geraint, Rigas, Stamatis, Stepanova, Anna N., Williams, Mary, Provart, Nicholas J.

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Sequence- and structure-based bioinformatic screening for potential Theileria parva transport-related proteins by Kotsovolos, Nikolaos, Schnittger, Leonhard, Sibeko-Matjila, Kgomotso

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COPO: a metadata platform for brokering FAIR data in the life sciences by Etuk, A., Shaw, F., González Beltran, A., Johnson, D., Laporte, Marie-Angélique, Rocca Serra, Philippe, Arnaud, Elizabeth, Devare, Medha, Kersey, Paul J., Sansone, Susanna-Assunta, Davey, R.P.

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The progression in developing genomic resources for crop improvement by Ruperao, P., Rangan, P., Shah, T., Thakur, V., Kalia, S., Mayes, S., Rathore, A.

“…Alongside the evolving DNA sequencing landscape, bioinformatics research teams have also evolved to accommodate the increasingly demanding techniques used to combine and interpret data, leading to many researchers moving from the lab to the computer. …”
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La implementación de visión por computadora basada en Inteligencia Artificial reveló variabilidad en caracteres del durazno contenida en una colección de germoplasma by Sanchez, Gerardo, Churichi, Alan X., Valentini, Gabriel Hugo, Aballay, Maximiliano Martín

Subjects: “…Bioinformatics…”
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BioTango: aplicar la inteligencia artificial para transformar la fruticultura by Sanchez, Gerardo

Subjects: “…Bioinformatics…”
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Developing integrated crop knowledge networks to advance candidate gene discovery by Hassani-Pak, Keywan, Castellote, Martín Alfredo, Esch, Maria, Hindle, Matthew, Lysenko, Artem, Taubert, Jan, Rawlings, Christopher John

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EXPLoRA-web: linkage analysis of quantitative trait loci using bulk segregant analysis by Pulido Tamayo, Sergio, Duitama, Jorge, Marchal, Kathleen

Subjects: “…computer applications…”
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Structural and molecular dynamics investigations of ligand stabilization via secondary binding site interactions in Paenibacillus xylanivorans GH11 xylanase by Briganti, Lorenzo, Capetti, Caio, Pellegrini, Vanessa O. A., Ghio, Silvina, Campos, Eleonora, Nascimento, Alessandro S., Polikarpov, Igor

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MegaSSR: a web server for large scale microsatellite identification, classification, and marker development by Mokhtar, Morad M., Alsamman, Alsamman M., El Allali, Achraf

“…Simple Sequence Repeats (SSRs) as genetic markers are increasingly used in molecular diversity and molecular breeding programs that require bioinformatics pipelines to analyze the large amounts of data. …”
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Constructing linkage maps in the genomics era with MapDisto 2.0 by Heffelfinger, Christopher, Fragoso, Christopher A., Lorieux, Mathias

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Ten simple rules for organizing a virtual conference—anywhere by Gichora, N.N., Fatumo, S.A., Ngara, M.V., Chelbat, N., Ramdayal, K., Villiers, Etienne P. de, Masiga, Daniel K., Bizzaro, J.W., Suravajhala, P., Ommeh, S.C., Hide, W.

“…1 International Institute of Tropical Agriculture, Nairobi, Kenya, 2 Faculty of Life Sciences, The University of Manchester, Manchester, United Kingdom, 3 Department of Computer and Information Sciences, Covenant University, Ota, Nigeria, 4 Institute of Bioinformatics, Johannes Kepler University, Linz, Austria, 5 Moroccan Society for Bioinformatics Institute, Morocco, 6 South African National Bioinformatics Institute, University of the Western Cape, Bellville, South Africa, 7 University of Cape Town, Cape Town, South Africa, 8 University of Notre Dame, South Bend, Indiana, United States of America, 9 Biotechnology Unit, University of Buea, Buea, South West Region, Cameroon, 10 International Livestock Research Institute, Nairobi, Kenya, 11 Biosciences Eastern and Central Africa, Nairobi, Kenya, 12 International Center of Insect Physiology and Ecology, Nairobi, Kenya, 13 Bioinformatics Organization, Hudson, Massachusetts, United States of America, 14 Bioinformatics Team, Center for Development of Advanced Computing, Pune University Campus, Pune, India, 15 Harvard School of Public Health, Boston, Massachusetts, United States of America…”
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K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes by Contreras-Moreira, Bruno, Filippi, Carla Valeria, Naamati, Guy, García Girón, Carlos, Allen, James E., Flicek, Paul

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