Search Results - "ggplot."
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Ordination graphs with vegan, BiodiversityR and ggplot2
Published 2020“…The main objective of this document is to give some examples of how data from ordination, such non metric multidimensional scaling or redundancy analysis that were obtained via vegan and BiodiversityR, can be plotted via ggplot2. The key intermediate steps to allow plotting with ggplot2 is to get data in the ‘long’ (tidy) format that is used in ggplot2, which can be achieved with some functions in BiodiversityR that should work with most ordination results.…”
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Species Accumulation Curves with vegan, BiodiversityR and ggplot2
Published 2020“…This obviously requires some working knowledge of the ggplot2 package, for which I will not give details here on specific functions, arguments and choices that I selected (as an introduction to ggplot2, I would especially recommend a two-part online workshop given by Thomas Lin Pedersen).…”
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Renyi Diversity Profiles with vegan, BiodiversityR and ggplot2
Published 2020“…This obviously requires some working knowledge of the ggplot2 package, for which I will not give details here on specific functions, arguments and choices that I selected (as an introduction to ggplot2, I would especially recommend a two-part online workshop given by Thomas Lin Pedersen).…”
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Adding dendrograms to ordination graphs with pvclust, vegan, BiodiversityR and ggplot2
Published 2020“…The main objective of this document is to show a pathway of how dendrograms for results that were obtained via pvclust can be added to ordination graphs in ggplot2. This documents builds on previous document where I showed how to generate ordination graphs with vegan, BiodiversityR and ggplot2 and how to create dendrograms for pvclust results with ggraph.…”
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AlleleShift: an R package to predict and visualize population-level changes in allele frequencies in response to climate change
Published 2021“…These visualizations include ‘dot plot’ graphics (function shift.dot.ggplot), pie diagrams (shift.pie.ggplot), moon diagrams (shift.moon.ggplot), ‘waffle’ diagrams (shift.waffle.ggplot) and smoothed surface diagrams of allele frequencies of baseline or future patterns in geographical space (shift.surf.ggplot). …”
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Journal Article -
AlleleShift: An R package to predict and visualize population-level changes in allele frequencies in response to climate change
Published 2021“…These include ‘dot plot’ graphics (function shift.dot.ggplot), pie diagrams (shift.pie.ggplot), moon diagrams (shift.moon.ggplot), ‘waffle’ diagrams (shift.waffle.ggplot) and smoothed surface diagrams of allele frequencies of baseline or future patterns in geographical space (shift.surf.ggplot). …”
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Preprint -
Influence of agroclimatic factors on the efficiency of multi-ovulation in cattle in the Peruvian tropics
Published 2025“…Data visualization was achieved using R Studio libraries, including ggplot2, factoextra, and FactoMineR. Results: The analyses highlight the influence of the interaction between humidity and temperature, resulting in THI on bovine stress, revealing complex interactions that primarily affect embryo production. …”
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Artículo -
Uso de jarabes a base de frutas tropicales sobre la aceptación y actividad de pecoreo de abejas melíferas (Apis mellifera spp.), Finca Santa Rosa, Managua 2024
Published 2025“…El análisis estadístico se realizó con el programa de software R, además se utilizaron los paquetes dplyr para la manipulación de datos, agricolae para la prueba de Tukey con la función HSD.test(), ggplot2 para la visualización de los resultados con gráficos, y multcompView para facilitar la representación de las letras de separación de medias. …”
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