Search Results - "Phylogenetics"

Germoplasma de cítricos y filogenética ('Citrus germplasm and phylogenetics') by Ancillo, Gema

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Phylogenetic classification of the world’s tropical forests by Slik, J.W.F., Franklin, J., Arroyo-Rodríguez, V., Field, R., Aguilar, S., Aguirre, N., Ahumada, J., Aiba, S-I., Alves, L.F., Anitha, K., Avella, A., Mora, F., Aymard C., G.A., Báez, S., Balvanera, P., Bastian, Meredith L., Bastin, J.F., Bellingham, P.J., Berg, E. van den, Conceição Bispo, Polyanna da, Boeckx, P., Boehning-Gaese, K., Bongers, F., Boyle, B., Brambach, F., Brearley, F.Q., Brown, S., Chai, S-L., Chazdon, R.L., Chen, S., Chhang, P., Chuyong, G.B., Ewango, C., Coronado, I.M., Cristóbal-Azkarate, J., Culmsee, H., Damas, K., Dattaraja, H.S., Davidar, P., Walt, S.J. de, Din, H., Drake, D.R., Duque, A., Durigan, G., Eichhorn, K., Eler, E.S., Enoki, T., Ensslin, A., Fandohan, A.B., Farwig, N., Feeley, K.J., Fischer, M., Forshed, O., Garcia, Q.S., Garkoti, S.C., Gillespie, T.W., Gillet, J.F., Gonmadje, C., Granzow-de la Cerda, I., Griffith, D.M., Grogan, J., Hakeem, K.R., Harris, D.J., Harrison, R.D., Hector, A., Hemp, A., Homeier, J., Hussain, M.S., Ibarra Manríquez, G., Hanum, I.F., Imai, N., Jansen, P.A., Joly, C.A., Joseph, S., Kartawinata, K., Kearsley, E., Kelly, D.L., Kessler, M., Killeen, T.J., Kooyman, R.M., Laumonier, Y., Laurance, S.G.W., Laurance, W.F., Lawes, M.J., Letcher, S.G., Lindsell, J., Lovett, J., Lozada, J., Lu, X., Lykke, A.M., Mahmud, K., Mahayani, N.P.D., Mansor, A., Marshall, A.R., Martin, E.H., Calderado Leal Matos, D., Meave, J.A., Melo, F.P.L., Mendoza, Z.H.A., Metali, F., Medjibe, V.P., Metzger, J.P., Metzker, T., Mohandass, D., Munguía-Rosas, M.A., Muñoz, R., Nurtjahy, E., Oliveira, E.L. de, Onrizal, O., Parolin, P., Parren, M., Parthasarathy, N., Paudel, E., Pérez, R., Pérez García, E.A., Pommer, U., Poorter, L., Qi, Lan, Piedade, M.T.F., Pinto, J.R.R., Poulsen, A.D., Poulsen, J.R., Powers, J.S., Prasad, R.C., Puyravaud, J-P., Rangel, O., Reitsma, J., Rocha, D.S.B., Rolim, S., Rovero, F., Rozak, A., Ruokolainen, K., Rutishauser, E., Rutten, G., Mohd. Said, M.N., Saiter, F.Z., Saner, P., Santos, B., Santos, J.R. dos, Sarker, S.K., Schmitt, C.B., Schoengart, J., Schulze, M., Sheil, D., Sist, P., Souza, A.F., Spironello, W.R., Sposito, T., Steinmetz, R., Stevart, T., Suganuma, M.S., Sukri, R., Sultana, A., Sukumar, R., Sunderland, T.C.H., Supriyadi, Suresh, H.S., Suzuki, E., Tabarelli, M., Tang, J., Tanner, E.V.J., Targhetta, N., Theilade, I., Thomas, D., Timberlake, J., Morisson Valeriano, M. de, Valkenburg, J. van, Tran, V.D., Hoang, V.S., Vandermeer, John H., Verbeeck, H., Vetaas, O.R., Adekunle, V., Vieira, S.A., Webb, C.O., Webb, E.L., Whitfeld, T., Wich, S., Williams, J., Wiser, Susan K., Wittmann, F., Yang, X., Adou Yao, C.Y., Yap, S.L., Zahawi, R.A., Zakaria, R., Zang, R.

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Phylogenetics and Evolution of Potato Virus V: Another Potyvirus that Originated in the Andes by Fuentes, S., Gibbs, A.J., Adams, I.P., Hajizadeh, M., Kreuze, Jan F., Fox, A., Blouin, A.G., Jones, R.A.C.

Subjects: “…phylogenetics…”
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Distribution and asymptotic behavior of the phylogenetic transfer distance by Dávila Felipe, Miraine, Domelevo Entfellner, Jean-Baka, Lemoine, Frédéric, Truszkowski, Jakub, Gascuel, Olivier

“…The transfer distance (TD) was introduced in the classification framework and studied in the context of phylogenetic tree matching. Recently, Lemoine et al. …”
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Integrating participatory and phylogenetic data into episystem research by Dione, Michel M.

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Phylogenetic analysis of pathogens: “From faeces to phylogeny” by International Livestock Research Institute

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Distribution and asymptotic behavior of the phylogenetic transfer distance by Felipe, M.D., Domelevo Entfellner, Jean-Baka, Lemoine, F., Truszkowski, J., Gascuel, O.

“…The transfer distance (TD) was introduced in the classification framework and studied in the context of phylogenetic tree matching. Recently, Lemoine et al. (2018) showed that TD can be a powerful tool to assess the branch support of phylogenies with large data sets, thus providing a relevant alternative to Felsenstein's bootstrap. …”
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Diversity and Phylogenetic Relations of Colombian Criollo Cattle. by Moreno O., Fernando, Derr, James N., Bermúdez G., Nelson, Ossa L., Jorge, Estrada L, Luzardo, Scott, Davis, Bedoya B., Gabriel, Carvajal, Luis Guillermo, Zuluaga, Fabio N., Berdugo, Jesús, Barrera, José, Ruíz Linares, Andrés

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No branch left behind: tracking terrestrial biodiversity from a phylogenetic completeness perspective by Pinto-Ledezma, Jesus N, Díaz, Sandra, Halpern, Benjamin S., Khoury, Colin, Cavender-Bares, Jeannine

Subjects: “…phylogenetics…”
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Renewing Felsenstein’s phylogenetic bootstrap in the era of big data by Lemoine, F., Domelevo Entfellner, Jean-Baka, Wilkinson, E., Correia, D., Dávila Felipe, D., Oliveira, T. de, Gascuel, O.

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Classification and phylogenetic typing of Rift Valley fever virus by Juma, John, Fonseca, V., Konongoi, Samson L., Oliveira, T. de, Christoffels, A., Oyola, Samuel O.

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Comparative genomic analysis and phylogenetic position of Theileria equi by Kappmeyer, Lowell S, Thiagarajan, Mathangi, Herndon, David R, Ramsay, Joshua D, Caler, Elisabet, Djikeng, Appolinaire, Gillespie, Joseph J., Lau, Audrey O.T., Roalson, Eric H., Silva, Joana C., Silva, Marta G, Suarez, Carlos E, Ueti, Massaro W, Nene, Vishvanath M., Mealey, Robert H, Knowles, Donald P., Brayton, Kelly A

“…Our analysis identified 50 genes that will be useful for definitive phylogenetic classification of T. equi and closely related organisms.…”
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Molecular and morphological phylogenetic analysis of Brachiaria and Urochloa (Poaceae) by Torres González, Alba Marina, Morton, C.M.

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Potato virus A isolates from three continents: their biological properties, phylogenetics and prehistory by Fuentes, S., Gibbs, A., Adams, I., Wilson, C., Botermans, M., Fox, A., Kreuze, Jan F., Boonham, N., Kehoe, M., Jones, R.

“…When five isolates were inoculated to a potato cultivar differential, three strain groups (= pathotypes) unrelated to phylogenetic groupings were recognized. No temporal signal was detected amongst the dated non-recombinant sequences, but PVA and potato virus Y (PVY) are from related lineages and ecologically similar, therefore 'relative dating' was obtained using a single maximum likelihood phylogeny of PVA and PVY sequences and PVY’s well-supported 157 CE 'time to most common recent ancestor'. …”
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Phylogenetic Distribution of Ralstonia solanacearum Species Complex Populations in Potato in Kenya by Okiro, L.A., Mulwa, R.M., Oyoo, M.E., Machuka, Eunice M., Parker, M.

Subjects: “…phylogenetics…”
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Genetic diversity and phylogenetic relationships in the genus Dioscorea using PCRRAPD by Mignouna, H., Asiedu, Robert, Thottappilly, G., Hahn, S.K.

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A taxonomic monograph of Ipomoea integrated across phylogenetic scales by Muñoz Rodríguez, P., Carruthers, T., Wood, J.R.I., Williams, B.R.M., Weitemier, K., Kronmiller, B., Goodwin, Z., Sumadijaya, A., Anglin, Noelle L., Filer, D., Harris, D., Rausher, M.D., Kelly, S., Liston, A., Scotland, Robert W.

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Prevalence and phylogenetic analysis of hepatitis E virus in pigs in Vietnam by Hu Suk Lee, Duy Tung Dao, Vuong Nghia Bui, Ngoc Anh Bui, Thanh Duy Le, Hung Nguyen-Viet, Grace, Delia, Thakur, K.K., Hagiwara, K.

“…The main objective of this study was to evaluate the sero-prevalence and phylogenetic analysis of HEV in Vietnam. Pig blood and fecal pooled samples were collected to assess the prevalence of HEV. …”
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Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships by Fu, Ning, Ji, Meiyuan, Rouard, Mathieu, Yan, Hai-Fei, Ge, Xue-Jun

Subjects: “…phylogenetic analysis…”
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Occurrence, identification and phylogenetic analyses of cereal cyst nematodes in Kyrgyzstan by Saleh, Azzam, Yıldız, Senol, Özer, Göksel, Mokrini, Fouad, Tair Esenali Uulu, İmren, Mustafa, Dababat, Abdelfattah A.

“…No variations in rDNA-ITS sequencing data were detected among the 31 cyst nematode populations, and the phylogenetic tree showed that Kyrgyz populations clustered with H. filipjevi populations from Belgium, Spain and Turkey, and separated populations from Germany, Iran, UK, Tajikistan, France and Russia. …”
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