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Enriched-GWAS and transcriptome analysis to refine and characterize a major QTL for anaerobic germination tolerance in rice by Tnani, Hedia, Chebotarov, Dmytro, Thapa, Ranjita, Ignacio, John Carlos I., Israel, Walter K., Quilloy, Fergie A., Dixit, Shalabh, Septiningsih, Endang M., Kretzschmar, Tobias

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Genetic mapping by sequencing more precisely detects loci responsible for anaerobic germination tolerance in rice by Ignacio, John Carlos I., Zaidem, Maricris, Casal, Carlos, Dixit, Shalabh, Kretzschmar, Tobias, Samaniego, Jaime M., Mendioro, Merlyn S., Weigel, Detlef, Septiningsih, Endang M.

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Utilizing PacBio Iso-Seq for novel transcript and gene discovery of abiotic stress responses in Oryza sativa L. by Schaarschmidt, Stephanie, Fischer, Axel, Lawas, Lovely Mae F., Alam, Rejbana, Septiningsih, Endang M., Bailey-Serres, Julia, Jagadish, Krishna S.V., Huettel, Bruno, Hincha, Dirk K., Zuther, Ellen

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Flood resilience loci SUBMERGENCE 1 and ANAEROBIC GERMINATION 1 interact in seedlings established underwater by Alam, Rejbana, Hummel, Maureen, Yeung, Elaine, Locke, Anna M., Ignacio, John Carlos I., Baltazar, Miriam D., Jia, Zhenyu, Ismail, Abdelbagi M., Septiningsih, Endang M., Bailey-Serres, Julia

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Responses of AG1 and AG2 QTL introgression lines and seed pre-treatment on growth and physiological processes during anaerobic germination of rice under flooding by Mondal, Satyen, Khan, M. Iqbal R., Entila, Frederickson, Dixit, Shalabh, Sta. Cruz, Pompe C., Panna Ali, M., Pittendrigh, Barry, Septiningsih, Endang M., Ismail, Abdelbagi M.

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Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance by Singh, Anuradha, Singh, Yashi, Mahato, Ajay K., Jayaswal, Pawan K., Singh, Sangeeta, Singh, Renu, Yadav, Neera, Singh, A.K., Singh, P.K., Singh, Rakesh, Kumar, Rajesh, Septiningsih, Endang M., Balyan, H.S., Singh, Nagendra K., Rai, Vandna

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An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies by Morales, Karina Y., Singh, Namrata, Perez, Francisco Agosto, Ignacio, John Carlos, Thapa, Ranjita, Arbelaez, Juan D., Tabien, Rodante E., Famoso, Adam, Wang, Diane R., Septiningsih, Endang M., Shi, Yuxin, Kretzschmar, Tobias, McCouch, Susan R., Thomson, Michael J.

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Growth, productivity and grain quality of AG1 and AG2 QTLs introgression lines under flooding in direct-seeded rice system by Mondal, Satyen, Khan, M. Iqbal R., Dixit, Shalabh, Sta. Cruz, Pompe C., Septiningsih, Endang M., Ismail, Abdelbagi M.

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Trait-based mapping to identify the genetic factors underlying anaerobic germination of rice: Phenotyping, GXE, and QTL mapping by Ghosal, Sharmistha, Quilloy, Fergie Ann, Casal, Carlos, Septiningsih, Endang M., Mendioro, Merlyn S., Dixit, Shalabh

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Increasing flooding tolerance in rice: combining tolerance of submergence and of stagnant flooding by Kato, Yoichiro, Collard, Bertrand C. Y., Septiningsih, Endang M., Ismail, Abdelbagi M.

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Deciphering genetics underlying stable anaerobic germination in rice: phenotyping, QTL identification, and interaction analysis by Ghosal, Sharmistha, Casal, Carlos, Quilloy, Fergie Ann, Septiningsih, Endang M., Mendioro, Merlyn S., Dixit, Shalabh

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QTL mapping for tolerance to anaerobic germination in rice from IR64 and the aus landrace Kharsu 80A by Baltazar, Miriam D., Ignacio, John Carlos I., Thomson, Michael J., Ismail, Abdelbagi M., Mendioro, Merlyn S., Septiningsih, Endang M.

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Optimizing sowing and flooding depth for anaerobic germination-tolerant genotypes to enhance crop establishment, early growth, and weed management in dry-seeded rice (Oryza sativa... by Chamara, Buddhika Sampath, Marambe, Buddhi, Kumar, Virender, Ismail, Abdelbagi M., Septiningsih, Endang M., Chauhan, Bhagirath Singh

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Agronomic manipulations can enhance the productivity of anaerobic tolerant rice sown in flooded soils in rainfed areas by Lal, B., Gautam, Priyanka, Nayak, A.K., Raja, R., Shahid, M., Tripathi, R., Singh, Sudhanshu, Septiningsih, Endang M., Ismail, Abdelbagi M.

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Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions by Singh, Anshuman, Carandang, Jerome, Gonzaga, Zennia Jean C., Collard, Bertrand C. Y., Ismail, Abdelbagi M., Septiningsih, Endang M.

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Mapping QTLs for submergence tolerance in rice using a population fixed for SUB1A tolerant allele by Gonzaga, Zennia Jean C., Carandang, Jerome, Singh, Anshuman, Collard, Bertrand C. Y., Thomson, Michael J., Septiningsih, Endang M.

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Genetics, physiological mechanisms and breeding of flood-tolerant rice (Oryza sativa L.) by Singh, Anuradha, Septiningsih, Endang M., Balyan, Harendra S., Singh, Nagendra K., Rai, Vandna

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Development of high-yielding rice varieties suitable for swampy lands in Indonesia by Rumanti, Indrastuti A., Nugraha, Yudhistira, Wening, Rina H., Gonzaga, Zennia Jean C., Suwarno, Nasution, Anggiani, Kusdiaman, Dede, Septiningsih, Endang M.

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EGRINs (Environmental Gene Regulatory Influence Networks) in rice that function in the response to water deficit, high temperature, and agricultural environments by Wilkins, Olivia, Hafemeister, Christoph, Plessis, Anne, Holloway-Phillips, Meisha-Marika, Pham, Gina M., Nicotra, Adrienne B., Gregorio, Glenn B., Jagadish, Krishna S.V., Septiningsih, Endang M., Bonneau, Richard, Purugganan, Michael

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Development of early maturing submergence-tolerant rice varieties for Bangladesh by Iftekharuddaula, Khandakar M., Ahmed, Helal U., Ghosal, Sharmistha, Amin, Al, Moni, Zakiah R., Ray, Bisnu P., Barman, Hirendra N., Siddique, Muhammad A., Collard, Bertrand C. Y., Septiningsih, Endang M.

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