Showing 1 - 20 results of 244 for search '"Yermanos A"', query time: 1.52s Refine Results
1
Applications of Machine and Deep Learning in Adaptive Immunity

Authors: Margarita Pertseva, Beichen Gao, Daniel Neumeier, Alexander Yermanos, Sai T. Reddy

Source: Annual Review of Chemical and Biomolecular Engineering. 12:39-62

Subject Terms: Renewable Energy, Sustainability and the Environment, General Chemical Engineering, General Chemistry

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::351388a7bc1f720b3c9fcbc1b10faf04
https://www.annualreviews.org/doi/pdf/10.1146/annurev-chembioeng-101420-125021

3
Periodical
Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity

Authors: Shlesinger, Danielle, Hong, Kai-Lin, Shammas, Ghazal, Page, Nicolas, Sandu, Ioana, Agrafiotis, Andreas, Kreiner, Victor, Fonta, Nicolas, Vincenti, Ilena, Wagner, Ingrid, Piccinno, Margot, Mariotte, Alexandre, Klimek, Bogna, Dizerens, Raphael, Manero-Carranza, Marcos, Kuhn, Raphael, Ehling, Roy, Frei, Lester, Khodaverdi, Keywan, Panetti, Camilla, Joller, Nicole, Oxenius, Annette, Merkler, Doron, Reddy, Sai T., Yermanos, Alexander

Source: Genes and Immunity; September 2022, Vol. 23 Issue: 6 p183-195, 13p

4
Academic Journal
Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells.

Authors: Neumeier, Daniel, Yermanos, Alexander, Agrafiotis, Andreas, Csepregi, Lucia, Chowdhury, Tasnia, Ehling, Roy A., Kuhn, Raphael, Cotet, Tudor-Stefan, Roberto, Raphaël Brisset-Di, Tacchio, Mariangela Di, Antonialli, Renan, Starkie, Dale, Lightwood, Daniel J., Oxenius, Annette, Reddy, Sai T.

Source: Proceedings of the National Academy of Sciences of the United States of America; 5/3/2022, Vol. 119 Issue 18, p1-11, 36p

Subject Terms: PLASMA cells, PHENOTYPES, IMMUNOGLOBULINS, CELLULAR immunity, VACCINE effectiveness, GENETIC counseling

5
Academic Journal
Tissue-resident CD8+ T cells drive compartmentalized and chronic autoimmune damage against CNS neurons.

Authors: Frieser, David, Pignata, Aurora, Khajavi, Leila, Shlesinger, Danielle, Gonzalez-Fierro, Carmen, Nguyen, Xuan-Hung, Yermanos, Alexander, Merkler, Doron, Höftberger, Romana, Desestret, Virginie, Mair, Katharina M., Bauer, Jan, Masson, Frederick, Liblau, Roland S.

Source: Science Translational Medicine; 4/13/2022, Vol. 14 Issue 640, p1-16, 16p

Subject Terms: T cells, CENTRAL nervous system diseases, AUTOIMMUNE diseases, IMMUNOLOGIC memory, NEURONS, BLOOD-brain barrier

7
Academic Journal
DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2.

Authors: Yermanos, Alexander, Hong, Kai-Lin, Agrafiotis, Andreas, Han, Jiami, Nadeau, Sarah, Valenzuela, Cecilia, Azizoglu, Asli, Ehling, Roy, Gao, Beichen, Spahr, Michael, Neumeier, Daniel, Chang, Ching-Hsiang, Dounas, Andreas, Petrillo, Ezequiel, Nissen, Ina, Burcklen, Elodie, Feldkamp, Mirjam, Beisel, Christian, Oxenius, Annette, Savic, Miodrag

Source: BMC Genomics; 4/11/2022, Vol. 23 Issue 1, p1-16, 16p

Subject Terms: SARS-CoV-2, WHOLE genome sequencing

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9
DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2

Authors: Yermanos, Alexander

Subject Terms: skin and connective tissue diseases, fungi, body regions, viruses, respiratory tract diseases

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a26fae8b4c38c3e75282274111d57203

12
Clonally expanded virus-specific CD8 T cells acquire diverse transcriptional phenotypes during acute, chronic, and latent infections

Authors: Raphael Kuhn, Ioana Sandu, Andreas Agrafiotis, Kai-Lin Hong, Daniel Neumeier, Doron Merkler, Annette Oxenius, Sai T. Reddy, Alexander Yermanos

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::3228c904e860e6f034516e772682acc9
https://syndication.highwire.org/content/doi/10.1101/2021.06.29.450285

13
Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes

Authors: Alexander Yermanos, Andreas Agrafiotis, Raphael Kuhn, Damiano Robbiani, Josephine Yates, Chrysa Papadopoulou, Jiami Han, Ioana Sandu, Cédric Weber, Florian Bieberich, Rodrigo Vazquez-Lombardi, Andreas Dounas, Daniel Neumeier, Annette Oxenius, Sai T Reddy

Source: NAR Genomics and Bioinformatics, 3 (2)
NAR Genomics and Bioinformatics

Subject Terms: AcademicSubjects/SCI00030, AcademicSubjects/SCI00980, AcademicSubjects/SCI01060, AcademicSubjects/SCI01140, AcademicSubjects/SCI01180, Methart

File Description: application/application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be01d5a1466ef24b44178990ac2798e0

15
Inter- and intraspecies comparison of phylogenetic fingerprints and sequence diversity of immunoglobulin variable genes

Authors: Andreas Dounas, Tanja Stadler, Victor Greiff, Annette Oxenius, Alexander Yermanos, Sai T. Reddy

Source: Immunogenetics. 72:279-294

Subject Terms: Genetics, Immunology, Repertoire, B-cell receptor, Phylogenetic tree, Evolutionary biology, Biology, Gene, Germline, V(D)J recombination, Somatic recombination, Phylogenetics, human activities

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8532ff2f9b47e830bb5a7e19778da386
https://link.springer.com/content/pdf/10.1007/s00251-020-01164-8.pdf

16
Academic Journal
Clonally Expanded Virus-Specific CD8 T Cells Acquire Diverse Transcriptional Phenotypes During Acute, Chronic, and Latent Infections.

Authors: Kuhn, Raphael, Sandu, Ioana, Agrafiotis, Andreas, Hong, Kai-Lin, Shlesinger, Danielle, Neimeier, Daniel, Merkler, Doron, Oxenius, Annette, Reddy, Sai T., Yermanos, Alexander

Source: Frontiers in Immunology; 2/2/2022, Vol. 13, p1-13, 13p

Subject Terms: T cells, LATENT infection, T cell receptors, CD8 antigen, PHENOTYPES

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17
Academic Journal
Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis.

Authors: Neumeier, Daniel, Pedrioli, Alessandro, Genovese, Alessandro, Sandu, Ioana, Ehling, Roy, Hong, Kai‐Lin, Papadopoulou, Chrysa, Agrafiotis, Andreas, Kuhn, Raphael, Shlesinger, Danielle, Robbiani, Damiano, Han, Jiami, Hauri, Laura, Csepregi, Lucia, Greiff, Victor, Merkler, Doron, Reddy, Sai T., Oxenius, Annette, Yermanos, Alexander

Source: European Journal of Immunology; Feb2022, Vol. 52 Issue 2, p297-311, 15p

Subject Terms: PLASMA cells, VIRUS diseases, LYMPHOCYTIC choriomeningitis virus, RECOMBINANT antibodies, VIRAL antigens

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18
Rapid expansion of Treg cells protects from collateral colitis following a viral trigger

Authors: Kung-Chi Kao, Felix Rost, Michelle Schorer, Annette Oxenius, Alexander Yermanos, Miro E. Raeber, Nicole Joller, Josua Oderbolz, Roman Spörri, Nikolas Rakebrandt, Jan D. Lünemann, Katharina Lambert, Christian W. Keller, Onur Boyman, Gerhard Rogler

Source: Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Schorer, Michelle; Lambert, Katharina; Rakebrandt, Nikolas; Rost, Felix; Kao, Kung-Chi; Yermanos, Alexander; Spörri, Roman; Oderbolz, Josua; Raeber, Miro E; Keller, Christian W; Lünemann, Jan D; Rogler, Gerhard; Boyman, Onur; Oxenius, Annette; Joller, Nicole (2020). Rapid expansion of Treg cells protects from collateral colitis following a viral trigger. Nature Communications, 11:1522.
Nature Communications, 11 (1)
Nature Communications

Subject Terms: lcsh:Science, lcsh:Q, Clinic for Immunology, Clinic for Gastroenterology and Hepatology, Institute of Experimental Immunology, 570 Life sciences, biology, 610 Medicine & health, immune regulation, viral infection, colitis, type I IFN, Science, General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Colitis, medicine.disease, medicine, Immune system, Immunology, CD8, Peripheral tolerance, Population, education.field_of_study, education, business.industry, business, FOXP3, Immunity, Autoimmunity, medicine.disease_cause, Article, Inflammatory bowel disease, Viral infection, Regulatory T cells, Mucosal immunology, chemical and pharmacologic phenomena, hemic and immune systems

File Description: application/pdf; application/application/pdf

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http://link.springer.com/article/10.1038/s41467-020-15309-6

19
Discovery and validation of novel human genomic safe harbor sites for gene and cell therapies

Authors: Erik Aznauryan, Alexander Yermanos, Elvira Kinzina, Edo Kapetanovic, Denitsa Milanova, George M. Church, Sai T. Reddy

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::e0a72286883211bc66a209717c872d79
https://syndication.highwire.org/content/doi/10.1101/2021.03.04.433856

20
A single-cell atlas of lymphocyte adaptive immune repertoires and transcriptomes reveals age-related differences in convalescent COVID-19 patients

Authors: Florian Bieberich, Rodrigo Vazquez-Lombardi, Alexander Yermanos, Roy A. Ehling, Derek M. Mason, Bastian Wagner, Edo Kapetanovic, Raphael Brisset Di Roberto, Cédric R. Weber, Miodrag Savic, Fabian Rudolf, Sai T. Reddy

Source: Frontiers in Immunology, 12
Frontiers in Immunology, Vol 12 (2021)
Frontiers in Immunology

Subject Terms: Single-cell, T cell, B cell, VDJ repertoire, COVID-19, Antibody, SARS-CoV-2, single-cell, antibody, Immunologic diseases. Allergy, RC581-607, Immunology, Immunology and Allergy, Original Research

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Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::056c702ea2ff4393e1415e1c180e2382
https://syndication.highwire.org/content/doi/10.1101/2021.02.12.430907

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