Authors: Sandra S. de Vries, Corina M. Markodimitraki, Jop Kind, Siddharth S. Dey, Kim L. de Luca, Koos Rooijers, Silke J. A. Lochs, Alex Chialastri, Franka J. Rang, Dylan Mooijman
Contributors: Hubrecht Institute for Developmental Biology and Stem Cell Research
Source:
Nature Protocols, 15(6), 1922-1953. Nature Publishing Group
Nat Protoc
Subject Terms: Animals, Cell Line, Tumor, DNA/genetics, DNA Methylation, Escherichia coli/genetics, Escherichia coli Proteins/genetics, Gene Expression Profiling/methods, Genomics/methods, Humans, Mice, Protein Binding, Proteins/genetics, Recombinant Fusion Proteins/genetics, Sequence Analysis, DNA/methods, Single-Cell Analysis/methods, Site-Specific DNA-Methyltransferase (Adenine-Specific)/genetics, Transcriptome, General Biochemistry, Genetics and Molecular Biology, Chemistry, DNA, chemistry.chemical_compound, Chromatin, Primer (molecular biology), DNA methylation, Sequence analysis, Fusion protein, Computational biology, Transcription (biology), Cell Line, Tumor, Sequence Analysis, DNA/methods, Article
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Authors: Buys de Barbanson, Hans Clevers, Marvin E. Tanenbaum, Alexander van Oudenaarden, Lenno Krenning, Nico Battich, Joep Beumer, Chloé S. Baron
Contributors: Hubrecht Institute for Developmental Biology and Stem Cell Research
Source: Science, 367(6482), 1151-1156. American Association for the Advancement of Science (AAAS)
Subject Terms: Multidisciplinary, Stem cell, Cell cycle, Biology, Cell, medicine.anatomical_structure, medicine, Cell biology, Cellular differentiation, Transcription (biology), Gene expression, RNA, Messenger RNA, Animals, Humans, Indicators and Reagents/chemistry, K562 Cells, Mice, RNA Stability, RNA, Messenger/metabolism, Sequence Analysis, RNA/methods, Single-Cell Analysis/methods, Transcription, Genetic, Uridine/analogs & derivatives, Messenger/metabolism, Sequence Analysis, RNA/methods, Transcription, Genetic
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https://syndication.highwire.org/content/doi/10.1126/science.aax3072
Authors: Vollger, Mitchell R., Logsdon, Glennis A., Audano, Peter A., Sulovari, Arvis, Porubsky, David, Peluso, Paul, Wenger, Aaron M., Concepcion, Gregory T., Kronenberg, Zev N., Munson, Katherine M., Baker, Carl, Sanders, Ashley D., Spierings, Diana C.J., Lansdorp, Peter M., Surti, Urvashi, Hunkapiller, Michael W., Eichler, Evan E.
Contributors: Damage and Repair in Cancer Development and Cancer Treatment (DARE), Stem Cell Aging Leukemia and Lymphoma (SALL), University of Groningen
Source:
Annals of Human Genetics, 84(2), 125-140. Wiley
Ann Hum Genet
Subject Terms: genome assembly, long-read sequencing, segmental duplications, structural variation, tandem repeats, REGIONS, Article, Biomarkers/analysis, Female, Genetic Variation, Genome, Human, Haploidy, High-Throughput Nucleotide Sequencing, Humans, Hydatidiform Mole/genetics, Molecular Sequence Annotation, Pregnancy, Sequence Analysis, DNA/methods, Single-Cell Analysis/methods, Computational biology, Structural variation, Segmental duplication, Genome, Genomic organization, Biology, Human genome, Tandem repeat, Gene Annotation, Sequence assembly, Genetics(clinical), Genetics, Human, Sequence Analysis, DNA/methods
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Authors: Christoph, Muus, Luecken , Malte D., Gökcen, Eraslan, Lisa, Sikkema, Avinash, Waghray, Graham, Heimberg, Yoshihiko, Kobayashi, Eeshit Dhaval Vaishnav, Ayshwarya, Subramanian, Christopher, Smillie, Jagadeesh, Karthik A., Elizabeth Thu Duong, Evgenij, Fiskin, Elena Torlai Triglia, Meshal, Ansari, Peiwen, Cai, Brian, Lin, Justin, Buchanan, Sijia, Chen, Jian, Shu, Haber, Adam L., Hattie, Chung, Montoro, Daniel T., Taylor, Adams, Hananeh, Aliee, Allon, Samuel J., Zaneta, Andrusivova, Ilias, Angelidis, Orr, Ashenberg, Kevin, Bassler, Christophe, Bécavin, Inbal, Benhar, Joseph, Bergenstråhle, Ludvig, Bergenstråhle, Liam, Bolt, Emelie, Braun, Bui, Linh T., Steven, Callori, Mark, Chaffin, Evgeny, Chichelnitskiy, Joshua, Chiou, Conlon, Thomas M., Cuoco, Michael S., Cuomo, Anna S. E., Marie, Deprez, Grant, Duclos, Denise, Fine, Fischer, David S., Shila, Ghazanfar, Astrid, Gillich, Bruno, Giotti, Joshua, Gould, Minzhe, Guo, Gutierrez, Austin J., Habermann, Arun C., Tyler, Harvey, Peng, He, Xiaomeng, Hou, Lijuan, Hu, Yan, Hu, Alok, Jaiswal, Lu, Ji, Peiyong, Jiang, Kapellos, Theodoros S., Kuo, Christin S., Ludvig, Larsson, Leney-Greene, Michael A., Kyungtae, Lim, Monika, Litviňuková, Ludwig, Leif S., Soeren, Lukassen, Wendy, Luo, Henrike, Maatz, Elo, Madissoon, Lira, Mamanova, Kasidet, Manakongtreecheep, Sylvie, Leroy, Mayr, Christoph H., Mbano, Ian M., McAdams, Alexi M., Nabhan, Ahmad N., Nyquist, Sarah K., Lolita, Penland, Poirion, Olivier B., Sergio, Poli, CanCan, Qi, Rachel, Queen, Daniel, Reichart, Ivan, Rosas, Schupp, Jonas C., Shea, Conor V., Xingyi, Shi, Rahul, Sinha, Sit, Rene V., Kamil, Slowikowski, Michal, Slyper, Smith, Neal P., Alex, Sountoulidis, Maximilian, Strunz, Sullivan, Travis B., Dawei, Sun, Carlos, Talavera-López, Peng, Tan, Jessica, Tantivit, Travaglini, Kyle J., Tucker, Nathan R., Vernon, Katherine A., Wadsworth, Marc H., Julia, Waldman, Xiuting, Wang, Ke, Xu, Wenjun, Yan, William, Zhao, Ziegler, Carly G. K., The NHLBI LungMap Consortium, Zerti, Darin, The Human Cell Atlas Lung Biological Network
Source: Nature Medicine, 27(3), 546-559. Nature Publishing Group
Subject Terms: Adult, Aged, Aged, 80 and over, Alveolar Epithelial Cells/metabolism, Angiotensin-Converting Enzyme 2/genetics, COVID-19/epidemiology, Cathepsin L/genetics, Datasets as Topic/statistics & numerical data, Demography, Female, Gene Expression Profiling/statistics & numerical data, Host-Pathogen Interactions/genetics, Humans, Lung/metabolism, Male, Middle Aged, Organ Specificity/genetics, Respiratory System/metabolism, SARS-CoV-2/physiology, Sequence Analysis, RNA/methods, Serine Endopeptidases/genetics, Single-Cell Analysis/methods, Virus Internalization, General Biochemistry, Genetics and Molecular Biology, General Medicine, 80 and over, Sequence Analysis, RNA/methods, respiratory system
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https://research.rug.nl/en/publications/singlecell-metaanalysis-of-sarscov2-entry-genes-across-tissues-and-demographics(ca4badb5-f4af-442e-94b7-7d69f61ddab6).html
Authors: Erwin M. Schoof, Benjamin Furtwängler, Nil Üresin, Nicolas Rapin, Simonas Savickas, Coline Gentil, Eric Lechman, Ulrich auf dem Keller, John E. Dick, Bo T. Porse
Source:
Schoof, E M, Furtwängler, B, Üresin, N, Rapin, N, Savickas, S, Gentil, C, Lechman, E, Keller, U A D, Dick, J E & Porse, B T 2021, ' Quantitative single-cell proteomics as a tool to characterize cellular hierarchies ', Nature Communications, vol. 12, 3341 . https://doi.org/10.1038/s41467-021-23667-y
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Nature Communications
Schoof, E M, Furtwängler, B, Üresin, N, Rapin, N, Savickas, S, Gentil, C, Lechman, E, Keller, U A D, Dick, J E & Porse, B T 2021, ' Quantitative single-cell proteomics as a tool to characterize cellular hierarchies ', Nature Communications, vol. 12, no. 1, pp. 3341 . https://doi.org/10.1038/s41467-021-23667-y
Subject Terms: General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Science, Article, Proteomics, Mass spectrometry, Cancer stem cells, Acute myeloid leukaemia, Proteome informatics, Humans, Leukemia, Myeloid, Acute, Mass Spectrometry, Neoplastic Stem Cells, Proteome/metabolism, Proteomics/methods, RNA, Single-Cell Analysis/methods, Workflow
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https://orbit.dtu.dk/en/publications/9eb8a036-d6cc-4f54-8133-ff98c5b68b55
Authors: Wimmers, Florian, Subedi, Nikita, van Buuringen, Nicole, Heister, Daan, Vivié, Judith, Beeren-Reinieren, Inge, Woestenenk, Rob, Dolstra, Harry, Piruska, Aigars, Jacobs, Joannes F. M., van Oudenaarden, Alexander, Figdor, Carl G., Huck, Wilhelm T. S., de Vries, I. Jolanda M., Tel, Jurjen
Contributors: Hubrecht Institute for Developmental Biology and Stem Cell Research, Institute for Complex Molecular Systems, Immunoengineering
Source:
Nature Communications, Vol 9, Iss 1, Pp 1-12 (2018)
Nature Communications, 9(1). Nature Publishing Group
Nature Communications
Nature Communications, 9, 1-12
Nature Communications, 9(1):3317. Nature Publishing Group
Subject Terms: Science, Cellular Microenvironment, Cross-Priming, Dendritic Cells/metabolism, Gene Expression Regulation, Humans, Interferon Type I/biosynthesis, Jurkat Cells, Paracrine Communication, Sequence Analysis, RNA, Single-Cell Analysis/methods, Stochastic Processes, Toll-Like Receptors/metabolism, Sequence Analysis, RNA, lcsh:Science, lcsh:Q, Chemistry(all), Biochemistry, Genetics and Molecular Biology(all), Physics and Astronomy(all), General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Interferon-alpha production, Paracrine signalling, Interferon, medicine.drug, medicine, Population, education.field_of_study, education, Immune system, Biology, Single-cell analysis, Regulation of gene expression, Cytokine, medicine.medical_treatment, Cell biology, SDG 3 - Good Health and Well-being, Article, Biochemistry, Genetics and Molecular Biology(all), hemic and immune systems
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https://doaj.org/article/5014ff7f8a254b8ab188443ef63dba4a
Authors: Ona K Miller, Ulrich Schwarz-Linek, Michael R. Hinrichsen, Lynne Regan, Peter S. Swain, J.M. Edwards, Simon G. J. Mochrie, M Lenz
Contributors: University of St Andrews.Biomedical Sciences Research Complex, University of St Andrews.School of Biology
Source: Hinrichsen, M, Lenz, M, Edwards, J M, Miller, O K, Mochrie, S G J, Swain, P S, Schwarz-Linek, U & Regan, L 2017, ' A new method for post-translationally labeling proteins in live cells for fluorescence imaging and tracking ', Protein engineering, design & selection : PEDS, vol. 30, no. 12, pp. 771-780 . https://doi.org/10.1093/protein/gzx059
Subject Terms: Molecular Biology, Biochemistry, Bioengineering, Biotechnology, Peptide, chemistry.chemical_classification, chemistry, Target protein, Fluorescence-lifetime imaging microscopy, Cell biology, Fluorescent protein, Covalent bond, Membrane protein, In situ, Protein engineering, Cell Tracking/methods, Fluorescent Dyes/analysis, Protein Engineering/methods, Protein Processing, Post-Translational, Saccharomyces cerevisiae/genetics, Single-Cell Analysis/methods, Spectrometry, Fluorescence/methods, Original Article, Fluorescence imaging, Post-translational labeling, QD Chemistry, QH301 Biology, NDAS, QD, QH301
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http://academic.oup.com/peds/article-pdf/30/12/771/29098404/gzx059.pdf
Authors: Rostom, Raghd, Svensson, Valentine, Teichmann, Sarah, Kar, Gozde
Source: Febs Letters
Subject Terms: Review Article, Review Articles, FOCUS ON… Single Cell Analysis, single‐cell analysis methods and tools, single‐cell genomics, Animals, Humans, Cluster Analysis, Sequence Analysis, RNA, Computational Biology, Gene Expression, Single-Cell Analysis, Cell Biology, Genetics, Molecular Biology, Biochemistry, Structural Biology, Biophysics, Computer science, Computational biology, Cluster analysis, Cellular resolution, Computational analysis, Inference, Bioinformatics, Branching (version control)
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http://europepmc.org/articles/PMC5575496
Authors: Sandra S. de Vries, Koos Rooijers, Corina M. Markodimitraki, Kim L. de Luca, Jop Kind, Siddharth S. Dey, Franka J. Rang, Alex Chialastri, Dylan Mooijman
Contributors: Hubrecht Institute for Developmental Biology and Stem Cell Research
Source:
Nature Biotechnology, 37(7), 766-772. Nature Publishing Group
Nature Biotechnology
Subject Terms: Cell type, Computational biology, Biology, Epigenome, Genomic organization, In silico, Transcriptome, Transcription factor, Gene expression, Chromatin, Animals, Cell Line, DNA-Binding Proteins/metabolism, Gene Expression Regulation, Protein Binding, Single-Cell Analysis/methods, Biomedical Engineering, Molecular Medicine, Applied Microbiology and Biotechnology, Bioengineering, Biotechnology, DNA, chemistry.chemical_compound, chemistry, Cell biology, Regulation of gene expression, Cell, medicine.anatomical_structure, medicine, Methyltransferase, Embryonic stem cell
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https://syndication.highwire.org/content/doi/10.1101/529388
Authors: Nidhi Sinha, Nikita Subedi, Jurjen Tel
Source:
Frontiers in Immunology, Vol 9 (2018)
Frontiers in Immunology
Subject Terms: immunoengineering, microfluidics, single-cell analysis, cellular heterogeneity, cellular communication, lcsh:Immunologic diseases. Allergy, lcsh:RC581-607, Microfluidic Analytical Techniques, Immunoassay, Single-Cell Analysis/methods, Humans, Microfluidics/methods, Cell Communication, Immune System/cytology, Animals, SDG 3 - Good Health and Well-being, Immunology, Immunology and Allergy, Immune system, Study methods, Droplet microfluidics, Cellular communication, Cell analysis, Microsystem, Single-cell analysis, Microfluidics, Review
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https://www.frontiersin.org/article/10.3389/fimmu.2018.02373/full
Authors: D’Avola, Delia, Villacorta-Martin, Carlos, Martins-Filho, Sebastiao N., Craig, Amanda, Labgaa, Ismail, von Felden, Johann, Kimaada, Allette, Bonaccorso, Antoinette, Tabrizian, Parissa, Hartmann, Boris M., Sebra, Robert, Schwartz, Myron, Villanueva, Augusto
Source:
Scientific Reports
Scientific reports, vol. 8, no. 1, pp. 11570
Scientific Reports, Vol 8, Iss 1, Pp 1-7 (2018)
Subject Terms: Multidisciplinary, Cancer, medicine.disease, medicine, MRNA Sequencing, Cytometry, Cancer research, Circulating tumor cell, business.industry, business, Gene expression profiling, Liquid biopsy, Carcinoma, Hepatocellular carcinoma, Article, Adult, Aged, Carcinoma, Hepatocellular/pathology, Female, Flow Cytometry, Gene Expression Profiling, Humans, Male, Middle Aged, Neoplastic Cells, Circulating/chemistry, RNA, Messenger/analysis, RNA, Messenger/genetics, Sequence Analysis, RNA, Single-Cell Analysis/methods, lcsh:Medicine, lcsh:R, lcsh:Science, lcsh:Q, digestive system diseases, neoplasms
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Authors: Tinevez, Jean-Yves, Perry, Nick, Schindelin, Johannes, Hoopes, Genevieve, Reynolds, Gregory, Laplantine, Emmanuel, Bednarek, Sebastian, Shorte, Spencer, Eliceiri, Kevin
Contributors: Imagopole (CITECH), Institut Pasteur [Paris], Laboratory for Optical and Computational Instrumentation [Madison], University of Wisconsin-Madison, Department of Biochemistry [Madison], Signalisation et Pathogénèse, Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris], Morgridge Institute for Research [Madison], The authors would like to extend their gratitude for financial support from the European commission FP7 ICT (project 'MEMI', J-Y.T, S.L.S.), the Laboratory for Optical and Computational Instrumentation at the UW-Madison and National Science Foundation award #1121998 (J.S., S.Y.B., K.W.E). N.P. was a Pasteur visiting student thanks to funds provisioned by the Stanford University. TrackMate development has been and is supported by the Fiji, ImageJ and KNIME communities. Their invaluable help particularly that of Fiji maintainer Curtis Rueden and KNIME image processing developer Christian Dietz is acknowledged here., European Project: 215597,EC:FP7:ICT,FP7-ICT-2007-1,MEMI(2008)
Source:
Methods
Methods, Elsevier, 2017, 115, pp.80-90. ⟨10.1016/j.ymeth.2016.09.016⟩
Subject Terms: Biochemistry, Genetics and Molecular Biology(all), Molecular Biology, Image analysis, Open-source software, Microscopy, Single-particle tracking, Phototoxicity, Clathin-mediated endocytosis, MESH: Adaptor Proteins, Vesicular Transport/genetics, MESH: Adaptor Proteins, Vesicular Transport/metabolism, MESH: Clathrin/metabolism, MESH: Embryo, Nonmammalian/metabolism, MESH: Embryo, Nonmammalian/ultrastructure, MESH: Endocytosis, MESH: Fibroblasts/metabolism, MESH: Fibroblasts/ultrastructure, MESH: Gene Expression Regulation, Plant, MESH: Image Processing, Computer-Assisted/statistics & numerical data, MESH: Light Signal Transduction, MESH: Plant Cells/metabolism, MESH: Algorithms, MESH: Plant Cells/ultrastructure, MESH: Single-Cell Analysis/methods, MESH: Single-Cell Analysis/statistics & numerical data, MESH: Software, MESH: Animals, MESH: Arabidopsis/metabolism, MESH: Arabidopsis/ultrastructure, MESH: Caenorhabditis elegans, MESH: Cell Tracking/methods, MESH: Cell Tracking/statistics & numerical data, MESH: Clathrin/genetics, [SDV.BC]Life Sciences [q-bio]/Cellular Biology, General Biochemistry, Genetics and Molecular Biology, Computer science, Software, business.industry, business, Visualization, Plug-in, computer.software_genre, computer, Extensibility, User interface, End user, Human–computer interaction, Bioinformatics, Modular design
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Authors: Sato, Y., Kujirai, T., Arai, R., Asakawa, H., Ohtsuki, C., Horikoshi, N., Yamagata, K., Ueda, J., Nagase, T., Haraguchi, T., Hiraoka, Y., Kimura, A., Kurumizaka, H., Kimura, Hiroshi
Source: Journal of Molecular Biology. 428(20):3885-3902
Subject Terms: Molecular Biology, Histone modification, Inactive X chromosome, Intracellular antibody, Live-cell imaging, Structural Biology, Histone H1, Single-cell analysis, Histone H2A, Biochemistry, Chromatin, Histone, biology.protein, biology, Histone code, Histone H4, Histone methyltransferase, Cell biology, Animals, Cells, Cultured, Crystallography, X-Ray, DNA Mutational Analysis, Gene Expression, Genes, Reporter, Histones/*analysis, Luminescent Proteins/analysis/chemistry/genetics, Methylation, Mice, Protein Processing, Post-Translational, Recombinant Fusion Proteins/analysis/chemistry/genetics, Single-Cell Analysis/*methods, Single-Chain Antibodies/analysis/chemistry/genetics
Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d776fa7882ed7bddb2ecd49316e3c911
Authors: Vértesy, Ábel, Arindrarto, Wibowo, Roost, Matthias S., Reinius, Björn, Torrens-Juaneda, Vanessa, Bialecka, Monika, Moustakas, Ioannis, Ariyurek, Yavuz, Kuijk, Ewart, Mei, Hailiang, Sandberg, Rickard, van Oudenaarden, Alexander, Chuva de Sousa Lopes, Susana M.
Contributors: Hubrecht Institute for Developmental Biology and Stem Cell Research
Source:
Nature Communications
Nature Communications, 9(1). Nature Publishing Group
NATURE COMMUNICATIONS
Nature Communications, 9
Nature Communications, Vol 9, Iss 1, Pp 1-10 (2018)
Subject Terms: Abortion, Legal, Adult, Chromosomes, Human, X/chemistry, DNA Methylation, Epigenesis, Genetic, Female, Fetus, Genetic Heterogeneity, Genomic Imprinting, Haplotypes, Humans, Male, Meiosis, Ovum/growth & development, Pregnancy, Pregnancy Trimesters, Single-Cell Analysis/methods, Transcriptome, Whole Exome Sequencing, X Chromosome Inactivation, Chemistry(all), Biochemistry, Genetics and Molecular Biology(all), Physics and Astronomy(all), Medicine and Health Sciences, Biology and Life Sciences, X-CHROMOSOME INACTIVATION, EMBRYONIC STEM-CELLS, LONG NONCODING RNAS, DNA-SEQUENCING DATA, GENOME, GENES, FATE, FRAMEWORK, DYNAMICS, DOMAIN, Abortion, Legal, Chromosomes, Human, X/chemistry, Epigenesis, Genetic, Biochemistry, Genetics and Molecular Biology(all), lcsh:Science, lcsh:Q, Science, General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Reprogramming, Biology, X chromosome, Embryonic stem cell, X-inactivation, Gene, Genomic imprinting, Epigenetics, Cell biology, Article
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Source:
PLoS Pathogens, Vol 13, Iss 10, p e1006678 (2017)
PLoS pathogens, vol. 13, no. 10, pp. e1006678
PLoS Pathogens
Subject Terms: lcsh:Immunologic diseases. Allergy, lcsh:RC581-607, lcsh:Biology (General), lcsh:QH301-705.5, Virology, Genetics, Molecular Biology, Immunology, Microbiology, Parasitology, Transcriptome, IL-2 receptor, Population, education.field_of_study, education, T cell, medicine.anatomical_structure, medicine, Biology, Single-cell analysis, Cell activation, Permissiveness, Cell, Molecular biology, CD4-Positive T-Lymphocytes/immunology, Cells, Cultured, HIV Infections/immunology, HIV-1/immunology, Humans, Lymphocyte Activation/immunology, Single-Cell Analysis/methods, Virus Replication/physiology, Research Article, Biology and Life Sciences, Cell Biology, Cellular Types, Animal Cells, Blood Cells, White Blood Cells, T Cells, Immune Cells, Medicine and Health Sciences, Medical Microbiology, Microbial Pathogens, Viral Pathogens, Immunodeficiency Viruses, HIV, Pathology and Laboratory Medicine, Pathogens, Organisms, Viruses, RNA viruses, Retroviruses, Lentivirus, Infectious diseases, Viral diseases, HIV infections, Gene Expression, Biochemistry, Biomarkers, Research and Analysis Methods, Mathematical and Statistical Techniques, Statistical Methods, Multivariate Analysis, Principal Component Analysis, Physical Sciences, Mathematics, Statistics (Mathematics), DNA, Forms of DNA, Complementary DNA, cDNA libraries, Nucleic acids, DNA libraries, Computational Biology, Genome Analysis, Transcriptome Analysis, Genomics
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http://europepmc.org/articles/PMC5658171?pdf=render
Authors: Angela Ciuffi, Sylvie Rato, Amalio Telenti, Monica Golumbeanu
Source:
Virus research, 239
Virus research, vol. 239, pp. 55-68
Subject Terms: Animals, Computational Biology/methods, Epigenesis, Genetic, Gene Expression Profiling, Genomics/methods, High-Throughput Nucleotide Sequencing, Host-Pathogen Interactions/genetics, Humans, Single-Cell Analysis/methods, Virus Diseases/genetics, Virus Diseases/virology, Virus Physiological Phenomena, Heterogeneity, Single-cell, Single-cell sequencing, Viral infection, Virus, Cancer Research, Infectious Diseases, Virology, Computational biology, Viral life cycle, Viral replication, Transcriptome, Single cell sequencing, Biology, Genome, Gene expression profiling, viruses
File Description: application/application/pdf; application/pdf
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Source: Immunogenetics, Vol. 69, No 7 (2017) pp. 439-450
Subject Terms: Animals, Databases, Genetic, Gene Expression Profiling, High-Throughput Nucleotide Sequencing/methods, Humans, Immunity, Innate/genetics/immunology, Killer Cells, Natural/immunology/metabolism, Lymphocytes/classification/immunology/metabolism, Mice, Sequence Analysis, RNA/methods, Single-Cell Analysis/methods, Genetics, Immunology, Innate immune system, Cell type, Computational biology, Tissue homeostasis, Innate lymphoid cell, Gene, RNA-Seq, Transcriptome, Gene expression profiling, Biology, skin and connective tissue diseases, body regions
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https://archive-ouverte.unige.ch/unige:132398
Authors: Aymoz, Delphine, Wosika, Victoria, Durandau, Eric, Pelet, Serge
Source:
Nature Communications
Nature Communications, vol. 7, pp. 11304
Nature Communications, Vol 7, Iss 1, Pp 1-12 (2016)
Subject Terms: General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, HSPA9, Biochemistry, Retinoblastoma-like protein 1, GPS2, Transport protein, Autophagy-related protein 13, Protein kinase A, HSPA2, Biology, Cell biology, Vesicle-associated membrane protein 8, Article, Gene Expression Regulation, Fungal, Genes, Reporter, Glycerol/metabolism, Glycerol-3-Phosphate Dehydrogenase (NAD+)/genetics, Glycerol-3-Phosphate Dehydrogenase (NAD+)/metabolism, Green Fluorescent Proteins/genetics, Green Fluorescent Proteins/metabolism, Luminescent Proteins/genetics, Luminescent Proteins/metabolism, Membrane Transport Proteins/genetics, Membrane Transport Proteins/metabolism, Protein Biosynthesis, Protein Processing, Post-Translational, Protein Transport, Saccharomyces cerevisiae/genetics, Saccharomyces cerevisiae/metabolism, Saccharomyces cerevisiae Proteins/genetics, Saccharomyces cerevisiae Proteins/metabolism, Single-Cell Analysis/methods, Time Factors, Science
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Source:
Genome Biology
Vallejos, C A, Richardson, S & Marioni, J C 2016, ' Beyond comparisons of means: understanding changes in gene expression at the single-cell level ', Genome Biology, vol. 17, 70 . https://doi.org/10.1186/s13059-016-0930-3
Subject Terms: Embryonic stem cell, Gene, False discovery rate, Computational biology, Posterior probability, Genomics, Gene expression, Biology, Cell cycle, Bayesian hierarchical modeling, Normalization (statistics), Differential expression, Bayes' theorem, Gene expression profiling, Cellular level, Genetics, Level data, Probabilistic logic, Method, Single-cell RNA-seq, Cellular heterogeneity, Animals, Bayes Theorem, Gene Expression Profiling/methods, Genetic Heterogeneity, Humans, Mice, Mouse Embryonic Stem Cells/cytology, Sequence Analysis, RNA/methods, Single-Cell Analysis/methods, Web Browser
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https://syndication.highwire.org/content/doi/10.1101/035949
Authors: Durandau, Eric, Aymoz, Delphine, Pelet, Serge
Source:
BMC Biology
BMC Biology, vol. 13, pp. 55
Subject Terms: Cell Biology, Developmental Biology, Plant Science, General Agricultural and Biological Sciences, General Biochemistry, Genetics and Molecular Biology, Physiology, Ecology, Evolution, Behavior and Systematics, Structural Biology, Biotechnology, Budding yeast, Cell biology, MAPK/ERK pathway, Kinase, Bioinformatics, Cell, medicine.anatomical_structure, medicine, Saccharomyces cerevisiae, biology.organism_classification, biology, Phosphorylation, Single-cell analysis, Kinase activity, MAP Kinase Signaling System, Microscopy, Fluorescence/methods, Mitogen-Activated Protein Kinases/metabolism, Saccharomyces cerevisiae/cytology, Saccharomyces cerevisiae/metabolism, Saccharomyces cerevisiae Proteins/metabolism, Single-Cell Analysis/methods, Methodology Article, Biochemistry, Genetics and Molecular Biology(all), Agricultural and Biological Sciences(all)
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