Search Results - "Seth-Smith, H. M. B."

File Description: SethSmith_NatProt_2013.pdf - application/pdf; n.prot.2013.147_manuscript_hss.pdf - application/pdf; n.prot.2013.147_manuscript_hss.2.pdf - application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=od_______885::4fe57a1c464d425fa6e92038ec79b10b
https://doi.org/10.5167/uzh-86263

6

Academic Journal

European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures.

Authors: Seth-Smith, H. M. B., Sánchez Busó, Leonor, Livingstone, M., Sait, M., Harris, S. R., Aitchison, K. D., Vretou, Evangelia, Siarkou, V. I., Laroucau, K., Sachse, K., Longbottom, D., Thomson, N. R.

Source: BMC Genomics; 5/4/2017, Vol. 18, p1-10, 10p, 2 Diagrams, 1 Graph

Subject Terms: CHLAMYDIA, GENOMES, ABORTION in animals, LIVESTOCK diseases, PREGNANCY in animals

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7

Cloning, sequencing, and characterization of the hexahydro-1,3,5-trinitro-1,3,5-triazine degradation gene cluster from Rhodococcus rhodochrous

Authors: Seth-Smith, H M B, Rosser, S J, Basran, A, Travis, E R, Dabbs, E R, Nicklin, S, Bruce, N C

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Access URL: https://explore.openaire.eu/search/publication?articleId=core_ac_uk__::13738c5090b1668c80fbc7d686f58940
https://eprints.whiterose.ac.uk/375/1/brucenc2.pdf

8

Academic Journal

Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity.

Authors: Last, A. R., Pickering, H., Roberts, C. h., Coll, F., Phelan, J., Burr, S. E., Cassama, E., Nabicassa, M., Seth-Smith, H. M. B., Hadfield, J., Cutcliffe, L. T., Clarke, I. N., Mabey, D. C. W., Bailey, R. L., Clark, T. G., Thomson, N. R., Holland, M. J.

Source: Genome Medicine; 2/26/2018, Vol. 10, p1-1, 1p

Subject Terms: CHLAMYDIA trachomatis, SEXUALLY transmitted diseases, GENETIC polymorphisms, NUCLEOTIDE sequencing, SINGLE nucleotide polymorphisms

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9

Academic Journal

Matching Clostridioides difficile strains obtained from shoe soles of healthcare workers epidemiologically linked to patients and confirmed by whole-genome sequencing.

Authors: Büchler AC; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, University of Basel, Basel, Switzerland., Wicki M; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, University of Basel, Basel, Switzerland., Frei R; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, University of Basel, Basel, Switzerland., Hinic V; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland; Clinical Bacteriology and Mycology, University Hospital Basel, University of Basel, Basel, Switzerland., Seth-Smith HMB; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland; Clinical Bacteriology and Mycology, University Hospital Basel, University of Basel, Basel, Switzerland., Egli A; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland; Clinical Bacteriology and Mycology, University Hospital Basel, University of Basel, Basel, Switzerland., Widmer AF; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, University of Basel, Basel, Switzerland. Electronic address: andreas.widmer@usb.ch.

Source: The Journal of hospital infection [J Hosp Infect] 2022 Aug; Vol. 126, pp. 10-15. Date of Electronic Publication: 2022 May 10.

Publication Type: Journal Article

Journal Info: Publisher: W.B. Saunders For The Hospital Infection Society Country of Publication: England NLM ID: 8007166 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-2939 (Electronic) Linking ISSN: 01956701 NLM ISO Abbreviation: J Hosp Infect Subsets: MEDLINE

MeSH Terms: Clostridioides difficile*/genetics , Clostridioides difficile*/isolation & purification , Clostridium Infections*/microbiology , Shoes*, Clostridioides ; Health Personnel ; Humans ; Pilot Projects ; Prospective Studies

10

Academic Journal

Does high adherence to contact precautions lead to low in-hospital transmission of multi-drug-resistant micro-organisms in the endemic setting?

Authors: Büchler AC; Division of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Dangel M; Division of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Frei R; Division of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Jäger S; Division of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Roth JA; Division of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Seth-Smith HMB; Division of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Egli A; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Widmer AF; Division of Infectious Diseases & Hospital Epidemiology, University Hospital Basel, Basel, Switzerland. Electronic address: andreas.widmer@usb.ch.

Source: The Journal of hospital infection [J Hosp Infect] 2021 Oct; Vol. 116, pp. 53-59. Date of Electronic Publication: 2021 Jul 10.

Publication Type: Journal Article

Journal Info: Publisher: W.B. Saunders For The Hospital Infection Society Country of Publication: England NLM ID: 8007166 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-2939 (Electronic) Linking ISSN: 01956701 NLM ISO Abbreviation: J Hosp Infect Subsets: MEDLINE

MeSH Terms: Cross Infection*/epidemiology , Cross Infection*/prevention & control , Methicillin-Resistant Staphylococcus aureus* , Pharmaceutical Preparations* , Staphylococcal Infections* , Vancomycin-Resistant Enterococci*, Hospitals ; Humans ; Infection Control

11

Academic Journal

Successful management of a Clostridioides difficile ribotype 027 outbreak with a lean intervention bundle.

Authors: Kuenzli AB; Department of Infectious Diseases, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland., Burri S; Department of Infectious Diseases, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland., Casanova C; Institute for Infectious Diseases, University of Bern, Bern, Switzerland., Sommerstein R; Department of Infectious Diseases, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland., Buetti N; Department of Infectious Diseases, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland; University of Paris, INSERM IAME, U1137, Team DesCID, Paris, France., Seth-Smith HMB; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Bodmer T; labormedizinisches zentrum Dr. Risch, Liebefeld, Switzerland., Egli A; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Marschall J; Department of Infectious Diseases, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland. Electronic address: jonas.marschall@insel.ch.

Source: The Journal of hospital infection [J Hosp Infect] 2020 Oct; Vol. 106 (2), pp. 240-245. Date of Electronic Publication: 2020 Aug 01.

Publication Type: Journal Article

Journal Info: Publisher: W.B. Saunders For The Hospital Infection Society Country of Publication: England NLM ID: 8007166 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-2939 (Electronic) Linking ISSN: 01956701 NLM ISO Abbreviation: J Hosp Infect Subsets: MEDLINE

12

Report

Bloodstream infection with Candida kefyr/Kluyveromyces marxianus: case report and draft genome.

Authors: Seth-Smith HMB; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland. Electronic address: Helena.Seth-Smith@usb.ch., Büchler AC; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Hinic V; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland., Medinger M; Division of Haematology, University Hospital Basel, Basel, Switzerland., Widmer AF; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Egli A; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland.

Source: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases [Clin Microbiol Infect] 2020 Apr; Vol. 26 (4), pp. 522-524. Date of Electronic Publication: 2019 Nov 20.

Publication Type: Case Reports; Letter

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 9516420 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-0691 (Electronic) Linking ISSN: 1198743X NLM ISO Abbreviation: Clin Microbiol Infect Subsets: MEDLINE

13

Academic Journal

Emendation of the Genus Auritidibacter Yassin et al. 2011 and Auritidibacter ignavus Yassin et al. 2011 based on features observed from Canadian and Swiss clinical isolates and whole-genome sequencing analysis.

Authors: Bernard KA; Department of Medical Microbiology, University of Manitoba, Winnipeg Manitoba, Canada.; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg Manitoba, Canada., Pacheco AL; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg Manitoba, Canada., Burdz T; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg Manitoba, Canada., Wiebe D; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg Manitoba, Canada., Beniac DR; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg Manitoba, Canada., Hiebert SL; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg Manitoba, Canada., Booth TF; Department of Medical Microbiology, University of Manitoba, Winnipeg Manitoba, Canada.; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg Manitoba, Canada., Jakopp B; Present address: Infectious Diseases Unit, Katonsspital Aarau, Aarau, Switzerland.; Division of Infectious Diseases and Hospital Epidemiology, University Hospital, Basel, Switzerland., Goldenberger D; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland., Seth-Smith HMB; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland.; Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland., Egli A; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Bernier AM; Department of Biology, Université de Saint-Boniface, Winnipeg Manitoba, Canada.

Source: International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Jan; Vol. 70 (1), pp. 83-88.

Publication Type: Journal Article

Journal Info: Publisher: Microbiology Society Country of Publication: England NLM ID: 100899600 Publication Model: Print Cited Medium: Internet ISSN: 1466-5034 (Electronic) Linking ISSN: 14665026 NLM ISO Abbreviation: Int J Syst Evol Microbiol Subsets: MEDLINE

MeSH Terms: Phylogeny*, Micrococcaceae/*classification, Aged ; Bacterial Typing Techniques ; Base Composition ; Canada ; DNA, Bacterial/genetics ; Ear/microbiology ; Fatty Acids/chemistry ; Female ; Humans ; Male ; Middle Aged ; Nucleic Acid Hybridization ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Switzerland

SCR Organism: Auritidibacter ignavus

14

Editorial & Opinion

Emerging anaerobic and partially acid-fast Lawsonella clevelandensis: extended characterization by antimicrobial susceptibility testing and whole genome sequencing.

Authors: Goldenberger D; Division of Clinical Bacteriology & Mycology, University Hospital Basel, University of Basel, Basel, Switzerland. Electronic address: daniel.goldenberger@usb.ch., Naegele M; Division of Clinical Bacteriology & Mycology, University Hospital Basel, University of Basel, Basel, Switzerland; Viollier Laboratories, Allschwil, Switzerland., Steffens D; Clinic of Gynaecology, University of Basel, Basel, Switzerland., Eichenberger R; Institute of Radiology, University of Basel, Basel, Switzerland., Egli A; Division of Clinical Bacteriology & Mycology, University Hospital Basel, University of Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Seth-Smith HMB; Division of Clinical Bacteriology & Mycology, University Hospital Basel, University of Basel, Basel, Switzerland; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland.

Source: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases [Clin Microbiol Infect] 2019 Nov; Vol. 25 (11), pp. 1447-1448. Date of Electronic Publication: 2019 Jul 12.

Publication Type: Letter

Journal Info: Publisher: Elsevier Country of Publication: England NLM ID: 9516420 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-0691 (Electronic) Linking ISSN: 1198743X NLM ISO Abbreviation: Clin Microbiol Infect Subsets: MEDLINE

SCR Organism: Lawsonella clevelandensis

15

Academic Journal

Complete Genome Assembly of an Auritidibacter ignavus Isolate Obtained from an Ear Infection in Switzerland and a Comparison to Global Isolates.

Authors: Seth-Smith HMB; Division of Clinical Bacteriology and Mycology, University Hospital Basel and University of Basel, Basel, Switzerland Helena.seth-smith@usb.ch.; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Goldenberger D; Division of Clinical Bacteriology and Mycology, University Hospital Basel and University of Basel, Basel, Switzerland., Bernard KA; Special Bacteriology Unit, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada.; Department of Medical Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada., Bernier AM; Department of Biology, Université de Saint-Boniface, Winnipeg, Manitoba, Canada., Egli A; Division of Clinical Bacteriology and Mycology, University Hospital Basel and University of Basel, Basel, Switzerland.; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland.

Source: Microbiology resource announcements [Microbiol Resour Announc] 2019 Jul 11; Vol. 8 (28). Date of Electronic Publication: 2019 Jul 11.

Publication Type: Journal Article

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101728794 Publication Model: Electronic Cited Medium: Internet ISSN: 2576-098X (Electronic) Linking ISSN: 2576098X NLM ISO Abbreviation: Microbiol Resour Announc Subsets: PubMed not MEDLINE

16

Academic Journal

Rare cases of Blastobotrys raffinosifermentans as cause of FEV1 decline in two CF patients - Whole genome sequencing to exclude transmission.

Authors: Jahn K; Clinic of Respiratory Medicine and Pulmonary Cell Research, University Hospital Basel, Basel, Switzerland. Electronic address: kathleen.jahn@usb.ch., Baettig V; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland., Seth-Smith HMB; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland; Clinical Microbiology, University Hospital Basel, Basel, Switzerland., Egli A; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland; Clinical Microbiology, University Hospital Basel, Basel, Switzerland., Tamm M; Clinic of Respiratory Medicine and Pulmonary Cell Research, University Hospital Basel, Basel, Switzerland.

Source: Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society [J Cyst Fibros] 2018 Mar; Vol. 17 (2), pp. e17-e19. Date of Electronic Publication: 2017 Dec 06.

Publication Type: Case Reports; Journal Article

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101128966 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-5010 (Electronic) Linking ISSN: 15691993 NLM ISO Abbreviation: J Cyst Fibros Subsets: MEDLINE

MeSH Terms: Candidiasis/*complications , Candidiasis/*diagnosis , Cystic Fibrosis/*microbiology , Cystic Fibrosis/*physiopathology , Yeasts/*isolation & purification, Adult ; Female ; Forced Expiratory Volume ; Humans ; Whole Genome Sequencing ; Young Adult

17

Academic Journal

Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity.

Authors: Last AR; Clinical Research Department, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK. anna.last@lshtm.ac.uk., Pickering H; Clinical Research Department, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK., Roberts CH; Clinical Research Department, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK., Coll F; Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK., Phelan J; Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK., Burr SE; Clinical Research Department, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK.; Disease Control and Elimination Theme, Medical Research Council Unit The Gambia, Fajara, Gambia., Cassama E; Programa Nacional de Saúde de Visão, Ministério de Saúde Publica, Bissau, Guinea-Bissau., Nabicassa M; Programa Nacional de Saúde de Visão, Ministério de Saúde Publica, Bissau, Guinea-Bissau., Seth-Smith HMB; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.; Clinical Microbiology, Universitätsspital Basel, Basel, Switzerland.; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland., Hadfield J; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK., Cutcliffe LT; Molecular Microbiology Group, University of Southampton Medical School, Southampton, UK., Clarke IN; Molecular Microbiology Group, University of Southampton Medical School, Southampton, UK., Mabey DCW; Clinical Research Department, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK., Bailey RL; Clinical Research Department, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK., Clark TG; Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK.; Department of Infectious Diseases Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK., Thomson NR; Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK.; Pathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK., Holland MJ; Clinical Research Department, London School of Hygiene and Tropical Medicine, Keppel Street, London, UK.

Source: Genome medicine [Genome Med] 2018 Feb 26; Vol. 10 (1), pp. 15. Date of Electronic Publication: 2018 Feb 26.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X (Electronic) Linking ISSN: 1756994X NLM ISO Abbreviation: Genome Med Subsets: MEDLINE

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18

Academic Journal

Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes.

Authors: O'Neill CE; Faculty of Medicine, CES Academic Unit, Level C, South Block, University of Southampton, Southampton General Hospital, Tremona Road, Southampton, UK., Seth-Smith HMB; The Wellcome Trust Sanger Institute, Pathogen Genomics, Hinxton, Cambridge, UK., Van Der Pol B; Department of Epidemiology and Biostatistics, Indiana University School of Public Health, Bloomington, IN, USA., Harris SR; The Wellcome Trust Sanger Institute, Pathogen Genomics, Hinxton, Cambridge, UK., Thomson NR; The Wellcome Trust Sanger Institute, Pathogen Genomics, Hinxton, Cambridge, UK., Cutcliffe LT; Faculty of Medicine, CES Academic Unit, Level C, South Block, University of Southampton, Southampton General Hospital, Tremona Road, Southampton, UK., Clarke IN; Faculty of Medicine, CES Academic Unit, Level C, South Block, University of Southampton, Southampton General Hospital, Tremona Road, Southampton, UK.

Source: Microbiology (Reading, England) [Microbiology (Reading)] 2013 Apr; Vol. 159 (Pt 4), pp. 748-756. Date of Electronic Publication: 2013 Feb 01.

Publication Type: Journal Article

Journal Info: Publisher: Microbiology Society Country of Publication: England NLM ID: 9430468 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1465-2080 (Electronic) Linking ISSN: 13500872 NLM ISO Abbreviation: Microbiology (Reading) Subsets: MEDLINE

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