Authors: García-Sancho, Miguel, Lowe, James

Subject Terms: Genome mapping, Yeast, Saccharomyces cerevisiae, Human DNA, Pig DNA, Sus scrofa, High throughput sequencing technology, Whole-genome projects, Sequence assembly, Annotation, European Commission, bic Book Industry Communication::P Mathematics & science::PD Science: general issues::PDX History of science, bic Book Industry Communication::M Medicine::MB Medicine: general issues::MBX History of medicine, bic Book Industry Communication::H Humanities::HB History::HBL History: earliest times to present day, bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences::PSV Zoology & animal sciences::PSVH Animal reproduction

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Relation: Medicine and Biomedical Sciences in Modern History

Access URL: https://library.oapen.org/handle/20.500.12657/62362

Authors: Ye Li, Weiwei Zheng, Yuena Sun, Tianjun Xu

Source: Aquaculture and Fisheries. 7:616-622

Subject Terms: Ecology, Aquatic Science, Ecology, Evolution, Behavior and Systematics, Protonibea diacanthus, Evolutionary biology, Genome, Phylogenetic tree, Gene, Sequence assembly, Gene family, Biology, DNA sequencing, Contig

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::892cdd2c70e9203e57d97e1c40685ac1
https://doi.org/10.1016/j.aaf.2021.05.003

Authors: Stephanie U. Greer, Susan M. Grimes, Hong-pyo Lee, Hanlee P. Ji, Dmitri S. Pavlichin, Tsachy Weissman

Source: Nucleic Acids Research. 50:W448-W453

Subject Terms: Genetics, Information retrieval, Web application, business.industry, business, Computer science, Metadata, Genome, Sequence assembly, Population, education.field_of_study, education, Data structure, Hash table, Search engine indexing

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https://doi.org/10.1093/nar/gkac266

Authors: Jiandong Bao, Q Q Wu, Jianqin Huang, Chuan-Qing Zhang

Source: Plant Disease. 106:1023-1026

Subject Terms: Plant Science, Agronomy and Crop Science, Strain (biology), Gene, Contig, Genome, Biology, Nanopore sequencing, Botryosphaeria dothidea, biology.organism_classification, Host (biology), Sequence assembly, Genetics

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::f6efdb55671303c917a25e1ee9cc6459
https://doi.org/10.1094/pdis-08-21-1623-a

Authors: Yuhui Sun, Fan Liang, Jiezhong Zhang, Yuhui Xiao, Weijin Qiu, Depeng Wang, Ou Wang, Shoufang Qu, Xiao Du, Fang Chen, Guangyi Fan, Jie Huang, Li-Li Li, Xinming Liang, Wenxin Zhang, Linying Wang, Yang Wang, Sanyang Liu, Shuai Sun, Weifei Yang, Fei Fan

Source: Genomics, Proteomics & Bioinformatics. 20:192-204

Subject Terms: Computational Mathematics, Genetics, Molecular Biology, Biochemistry, Nanopore sequencing, Sequence assembly, Structural variation, Computational biology, Benchmark (computing), False positive paradox, Genome, Giga, Sanger sequencing, symbols.namesake, symbols, Computer science

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::70bbbea831ae1ea4404594ad0039b1e3
https://doi.org/10.1016/j.gpb.2020.10.006

Authors: Fei Ge, Jianwei Huang, Lang Pan, Jingtao Qu, Guangtang Pan, Guangsheng Yuan, Yaou Shen, Chaoying Zou, Langlang Ma, Cong Yang, Peng Liu

Source: Crop Journal, Vol 10, Iss 1, Pp 47-55 (2022)

Subject Terms: Plant Science, Agronomy and Crop Science, Gene mapping, Gene, Quantitative trait locus, Genome, Sequence assembly, Structural variation, Computational biology, Reference genome, Biology, Whole genome sequencing, food and beverages, Maize, Embryonic callus, A188, Genome assembly, Single-molecule sequencing, Agriculture, Agriculture (General), S1-972

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cdec4e72bdb80e9747beb8bdecadb3ac
https://doi.org/10.1016/j.cj.2021.08.002

Authors: Brenda D. Wingfield, Michael J. Wingfield, Francois Roets, Janneke Aylward

Source: BioTechniques. 72:39-50

Subject Terms: General Biochemistry, Genetics and Molecular Biology, Biotechnology, Biology, Metagenomics, Sequence assembly, Computational biology, Genome, Sample (material), Taxon, Contamination, Teratosphaeria, biology.organism_classification, Fungus

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::b8b504a698cf06ea1cde457966f35e2c
https://doi.org/10.2144/btn-2021-0097

Authors: Jianjun Lu, Peng Cui, Donghai Li, Shiyou Lü, Rui Qin, Cheng Pan, Sen Wang, Jue Ruan, Wei Fan, Huayan Zhao, Bing He, Qiang Lin, Lianlian Hu, Wanfei Liu, Kun Qian

Source: Genomics, Proteomics & Bioinformatics. 20:42-59

Subject Terms: Computational Mathematics, Genetics, Molecular Biology, Biochemistry, Biology, Genetic variation, Adaptation, Abiotic stress, Sequence assembly, Gene, Evolutionary biology, Genome, Genome size, Gene family

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::a5fa2065bac4243becbc74a0be2a5edf
https://doi.org/10.1016/j.gpb.2021.04.003

Authors: Gipsi Lima-Mendez, Robert D. Finn, Lorna Richardson, Mathieu Mahillon, Claude Bragard, Jun-Min Li, Alain Decroës, Anne Legrève, Euphemia Mutasa-Gottgens

Contributors: UCL - SST/ELI/ELIM - Applied Microbiology, UCL - SST/LIBST - Louvain Institute of Biomolecular Science and Technology

Source: Genomics, Vol. 114, no.1, p. 9-22 (2022)
Decroës, A, Li, J M, Richardson, L, Mutasa-Gottgens, E, Lima-Mendez, G, Mahillon, M, Bragard, C, Finn, R D & Legrève, A 2022, ' Metagenomics approach for Polymyxa betae genome assembly enables comparative analysis towards deciphering the intracellular parasitic lifestyle of the plasmodiophorids ', Genomics, vol. 114, no. 1, pp. 9-22 . https://doi.org/10.1016/j.ygeno.2021.11.018

Subject Terms: Genetics, Plasmodiophora, biology.organism_classification, biology, Genomics, Eukaryote, Gene, Zoospore, Sequence assembly, Genome, Metagenomics, Computational biology, Polymyxa betae, Rhizaria, Spongospora, Ankyrin repeats, CatSper

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https://doi.org/10.1016/j.ygeno.2021.11.018

Authors: Wenwu Ye, Xin Liu, Fangwei Yu, Xin Fang, Sherif Ramzy, Jianrong Shi, Yin-Won Lee, Kainan Li, Zhichao Zhang, Jianhong Xu, Shuang Wang, Fei Dong

Source: Molecular Plant-Microbe Interactions®. 35:85-89

Subject Terms: Agronomy and Crop Science, General Medicine, Physiology, Genetic diversity, Genome, Sequence assembly, Whole genome sequencing, Genetics, Fusarium, biology.organism_classification, biology, Blight, Gene, Strain (biology), food and beverages

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::087a3f1331e262c6cdfa878130ab297d
https://doi.org/10.1094/mpmi-07-21-0182-a

Authors: Dongsung Lee, Inkyung Jung, Kyukwang Kim, Mooyoung Kim, Yubin Kim

Source: Seminars in Cell & Developmental Biology. 121:161-170

Subject Terms: Cell Biology, Developmental Biology, Cancer genome, Computational biology, Biology, Mammalian genome, Haplotype, Sequence assembly, Identification (biology), Chromatin, Genome

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::38d8ea971b4ba83bbc9b9510d7e118a1
https://doi.org/10.1016/j.semcdb.2021.04.024

Authors: Xiaokang Zhuo, Cunquan Yuan, Like Qiu, Lulu Li, Lidan Sun, Tangren Cheng, Tangchun Zheng, Weichao Liu, Jia Wang, Qixiang Zhang, Zhiyong Zhang, Ping Li

Source: New Phytologist. 235:141-156

Subject Terms: Plant Science, Physiology, Prunus, Chromosome, Biology, Gene, Evolutionary biology, Genome, Morphology (biology), Sequence assembly, Phenotype, Arabidopsis thaliana, biology.organism_classification

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::9209a56f56dbfed8d06444969950165a
https://doi.org/10.1111/nph.17894

Authors: Shengli Gu, Siqi Liu, Yeyan Qiu, James Young, Jianjun Liu, Liping Gu, Ruanbao Zhou, Jinxiu Dong, Liuwang Nie, Kai Zheng, Min Tang, Ziming Wang, Lei Xiong

Source: Molecular Ecology Resources. 22:1596-1605

Subject Terms: Genetics, Ecology, Evolution, Behavior and Systematics, Biotechnology, Genome evolution, Evolutionary biology, Genome, Nanopore sequencing, Contig, Synteny, Mauremys reevesii, biology.organism_classification, biology, Turtle (robot), law.invention, law, Sequence assembly

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::ee9d14c0eeb825781c1e9b1f3bb6be56
https://doi.org/10.1111/1755-0998.13563

Authors: Fabiano Bezerra Menegidio, Alexandre S. Simeone, Giovana Souza Branco, Alexandre Wagner Silva Hilsdorf, Daniela L. Jabes, David Aciole Barbosa, Renata G. Moreira, Bruno C. Araújo, Luiz R. Nunes

Source: Marine Biotechnology. 24:255-262

Subject Terms: Applied Microbiology and Biotechnology, De novo transcriptome assembly, Transcriptome, Biology, Seriola lalandi, food.food, food, Cobia, biology.organism_classification, Microsatellite, Computational biology, Seriola dumerili, Sequence assembly, Illumina dye sequencing

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::94f51532b46228410369bbf891ec585d
https://doi.org/10.1007/s10126-021-10081-0

Authors: Priyanka Sharma, Agnelo Furtado, Bruce Topp, Ardashir Kharabian Masouleh, Robert J Henry

Source: The Plant Journal. 109:727-736

Subject Terms: Cell Biology, Plant Science, Genetics, Telomere, Genome, Gene, Contig, Sequence assembly, Nuclear gene, Computational biology, Sequence (medicine), Chromosome, Biology, food and beverages

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::7843fa8e099c3d30d556f4f0129e7d27
https://doi.org/10.1111/tpj.15583

Authors: Qinqin Yang, Tao Lin, Wencai Yang, Baoan Wang, Xiaolin Geng, Ge Meng, Yuefan Du, Qiang Gao, Bin Liang, Xiao Su, Yingfang Zhu

Source: BMC Genomics, Vol 22, Iss 1, Pp 1-12 (2021)
BMC Genomics

Subject Terms: de novo tomato genome, comparative genomics, high-density genetic map, QTL analysis, Biotechnology, TP248.13-248.65, Genetics, QH426-470, food and beverages, fungi, Research, Computational biology, Solanum, biology.organism_classification, biology, Sequence assembly, Genome, Accession number (bioinformatics), Domestication, Reference genome, Gene, Functional genomics

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b9cfec596212af147ea0bc57a3d475c
https://doaj.org/article/d5df79436e2b486996ab5c5645902e02

Authors: Eric Chen, Inanc Birol, René L. Warren, Jessica Zhang, Justin Chu

Source: IEEE/ACM transactions on computational biology and bioinformatics

Subject Terms: Article, Biology and genomics, draft genome, language models, deep learning, NLP, neural networks, Quantitative Biology - Genomics, Computer Science - Artificial Intelligence, Genomics (q-bio.GN), Artificial Intelligence (cs.AI), FOS: Biological sciences, FOS: Computer and information sciences, Applied Mathematics, Genetics, Biotechnology, Language model, Genomics, Artificial intelligence, business.industry, business, DNA sequencing, Reference genome, Deep learning, Proof of concept, Computational biology, Genome, Computer science, Sequence assembly

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e18fa36546c6c8cbadd62940c1a63c18
http://europepmc.org/articles/PMC8772386

Authors: Min Liu, Ying-Qiang Wen, Ying Wu, Guihua Ke, Bo Mu, Kai-Cheng Cui, Xing-Yuan Zhang, Shunyuan Xiao, Yong-Tao Han

Source: Molecular Plant-Microbe Interactions®. 34:1446-1449

Subject Terms: Agronomy and Crop Science, General Medicine, Physiology, Sequence assembly, Genetics, Genome, Contig, Biology, Illumina dye sequencing, Whole genome sequencing, Genome evolution, Powdery mildew, Gene

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_________::432e640e06948ef0efe104050b4200bd
https://doi.org/10.1094/mpmi-03-21-0061-a

Authors: Yunjia Song, Yuan Lv, Yingjiao Ju, Xutao Sun, Yang Wang, Dejun Liu, Jinge Yang

Source: Journal of Global Antimicrobial Resistance, Vol 27, Iss, Pp 75-78 (2021)

Subject Terms: Microbiology (medical), Immunology, Immunology and Allergy, Microbiology, Gene, Sequence assembly, Genome, Insertion sequence, Whole genome sequencing, Colistin, medicine.drug, medicine, Biology, Genetics, DNA sequencing, Locus (genetics), Colistin resistance, mgrB, Whole-genome sequencing, Klebsiella pneumoniae, Nosocomial infection, QR1-502

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::28e7e87ae177cf4791088edd0feb1d74
https://doi.org/10.1016/j.jgar.2021.07.004

Authors: Matthew C. Brandley, Gregory F. Ball, Tim De Meyer, Lee A. Rollins, Phillip Cassey, Melissa Bateson, Wesley C. Warren, Richard Edwards, Scott J. Werner, Yuanyuan Cheng, Katarina C. Stuart, David W. Burt, Natalie R. Hofmeister, William B. Sherwin, Simone Meddle, D. F. Clayton, Katherine L. Buchanan

Source: Stuart, K, Edwards, R, Cheng, Y, Warren, W, Burt, D, Sherwin, W, Hofmeister, N, Werner, S, Ball, G F, Bateson, M, Brandley, M, Buchanan, K L, Cassey, P, Clayton, D F, De Meyer, T, Meddle, S & Rollins, L 2022, ' Transcript-and annotation-guided genome assembly of the European starling ', Molecular Ecology Resources, vol. 22, no. 8, pp. 3141-3160 . https://doi.org/10.1111/1755-0998.13679

Subject Terms: Sturnus vulgaris, full-length transcripts, genome annotation, genome assembly, genome assessment, Genomics, Zebra finch, Transcriptome, Population, education.field_of_study, education, Biology, Gene Annotation, Genome, Computational biology, Nanopore sequencing, Sequence assembly, Genetics, Ecology, Evolution, Behavior and Systematics, Biotechnology

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https://www.pure.ed.ac.uk/ws/files/286856300/Molecular_Ecology_Resources_2022_Stuart_Transcript_and_annotation_guided_genome_assembly_of_the_European_starling.pdf