Showing 1 - 20 results of 144 for search '"Sequence Analysis, DNA methods"', query time: 1.33s Refine Results
1
Utilising mass cytometry with CD45 barcoding and standardised leucocyte phenotyping for immune trajectory assessment in critically ill patients

Authors: Cynthia Bishop, Matthew Fish, Manu Shankar-Hari, Richard Ellis, Katrina Todd, Chad M. Swanson, Nedyalko Petrov, Mervyn Singer

Source: Fish, M, Ellis, R, Bishop, C, Todd, K, Petrov, N, Singer, M, Swanson, C M & Shankar-Hari, M 2021, ' Utilising mass cytometry with CD45 barcoding and standardised leucocyte phenotyping for immune trajectory assessment in critically ill patients ', British Journal of Anaesthesia, vol. 126, no. 4, pp. e149-e152 . https://doi.org/10.1016/j.bja.2021.01.006

Subject Terms: Anesthesiology and Pain Medicine, Medicine, business.industry, business, Sepsis, medicine.disease, Critically ill, Immune system, Mass cytometry, Immunology, Critical Illness, Flow Cytometry/methods, Humans, Immunity, Cellular/genetics, Leukocyte Common Antigens/genetics, Leukocytes, Mononuclear/immunology, Phenotype, Sequence Analysis, DNA/methods

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Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad728af48ce45ef2d28dc79449ff3511
https://doi.org/10.1016/j.bja.2021.01.006

2
Metagenomic binning with assembly graph embeddings

Authors: Katja Hose, André Lamúrias, Thomas Dyhre Nielsen, Mads Albertsen, Mantas Sereika

Source: Lamurias, A, Sereika, M, Albertsen, M, Hose, K & Nielsen, T D 2022, ' Metagenomic binning with assembly graph embeddings ' . https://doi.org/10.1101/2022.02.25.481923
Lamurias, A, Sereika, M, Albertsen, M, Hose, K & Nielsen, T D 2022, ' Metagenomic binning with assembly graph embeddings ', Bioinformatics, vol. 38, no. 19, pp. 4481-4487 . https://doi.org/10.1093/bioinformatics/btac557

Subject Terms: Bioinformatics, Metagenomics, Deep Learning, Graph Neural Networks, SDG 15 - Life on Land, SDG 3 - Good Health and Well-being, Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability, Algorithms, Genome, Microbial, Metagenome, Metagenomics/methods, Sequence Analysis, DNA/methods, SDG 14 - Life Below Water

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Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::76dc616092aaace506351600dcbc3103
https://vbn.aau.dk/da/publications/57ca44b5-7e20-46f0-9838-d69f115cdbd5

4
Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input

Authors: Yasuyuki Ohkawa, Masaru Nakao, Tetsuya Handa, Shoko Sato, Hiroshi Kimura, Kazumitsu Maehara, Naoki Goto, Hitoshi Kurumizaka, Akihito Harada

Source: Nat Protoc. 15(No. 10):3334-3360

Subject Terms: Animals, Cell Line, Cell Line, Tumor, Chromatin/metabolism, Chromatin Immunoprecipitation/methods, Chromatin Immunoprecipitation Sequencing/*methods, Chromosome Mapping/*methods, DNA-Binding Proteins/*analysis, Epigenesis, Genetic/genetics, Epigenomics/methods, Gene Library, Genome, Genomics, High-Throughput Nucleotide Sequencing/methods, Histones/metabolism, Humans, Mice, Protein Processing, Post-Translational/genetics, Sequence Analysis, DNA/methods, Transcription Factors/metabolism, Transposases/metabolism, General Biochemistry, Genetics and Molecular Biology, Genomic library, Chromatin, Computational biology, Whole genome sequencing, Chemistry, Epigenomics, Transcription factor, Transcription (biology), Target protein, Chromatin immunoprecipitation

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c50bc452fda4a4a158547265a477299
http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100852388

5
Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq

Authors: Franka J. Rang, Sandra S. de Vries, Siddharth S. Dey, Silke J A Lochs, Koos Rooijers, Alex Chialastri, Kim L. de Luca, Dylan Mooijman, Jop Kind, Corina M. Markodimitraki

Contributors: Hubrecht Institute for Developmental Biology and Stem Cell Research

Source: Nature Protocols, 15(6), 1922-1953. Nature Publishing Group
Nat Protoc

Subject Terms: Animals, Cell Line, Tumor, DNA/genetics, DNA Methylation, Escherichia coli/genetics, Escherichia coli Proteins/genetics, Gene Expression Profiling/methods, Genomics/methods, Humans, Mice, Protein Binding, Proteins/genetics, Recombinant Fusion Proteins/genetics, Sequence Analysis, DNA/methods, Single-Cell Analysis/methods, Site-Specific DNA-Methyltransferase (Adenine-Specific)/genetics, Transcriptome, Cell Line, Tumor, Sequence Analysis, DNA/methods, General Biochemistry, Genetics and Molecular Biology, Chromatin, Fusion protein, Chemistry, DNA, chemistry.chemical_compound, Computational biology, Sequence analysis, Gene expression, DNA methylation, Transcription (biology), Article

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::448d28caf6d66914c2a6bf94b54d4c42

6
Targeted exon sequencing in deceased schizophrenia patients in Denmark

Authors: Niels Morling, Johannes Rødbro Busch, Jeppe Dyrberg Andersen, Anna-Roos Leerschool, Sofie Lindgren Christiansen, Carla Rodriguez-Proano, Martin Christensen, Gonçalo Espregueira Themudo, Jytte Banner

Contributors: RS: CAPHRI - R5 - Optimising Patient Care, Complexe Genetica

Source: Espregueira Themudo, G, Leerschool, A-R, Rodriguez-Proano, C, Christiansen, S L, Andersen, J D, Busch, J R, Christensen, M R, Banner, J & Morling, N 2020, ' Targeted exon sequencing in deceased schizophrenia patients in Denmark ', International Journal of Legal Medicine (Online), vol. 134, no. 1, pp. 135-147 . https://doi.org/10.1007/s00414-019-02212-z
International Journal of Legal Medicine, 134(1), 135-147. Springer, Cham

Subject Terms: Pathology and Forensic Medicine, Genomics, Genetics, Massive parallel sequencing, Single-nucleotide polymorphism, Genetic association, Allele frequency, Medicine, business.industry, business, Exome sequencing, Population, education.field_of_study, education, Genome-wide association study, bipolar disorder, framework, genes, genome-wide association, genomics, haloplex, individuals, major depressive disorder, massively parallel sequencing, molecular autopsy, rare, risk, schizophrenia, unexplained death victims, variants, Adult, Aged, Cause of Death, Denmark, Exons, Female, Gene Expression Profiling, Gene Frequency, Genetic Variation, Genome-Wide Association Study, Humans, Male, Middle Aged, Polymorphism, Single Nucleotide, Prospective Studies, Schizophrenia/genetics, Sequence Analysis, DNA/methods

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cf71afdc5de93a61993bf2d879a05161
https://doi.org/10.1007/s00414-019-02212-z

7
Molecular epidemiology of respiratory syncytial virus in children in sub‐Saharan Africa

Authors: Ayola A. Adegnika, Sabine Gies, Jana Held, Juergen May, Isabella Eckerle, Benjamin Mordmüller, Lwitiho Sudi, Paul Schnitzler, Daniel Eibach, Ali Sié, Benedikt Hogan, Clara Marlene Ihling, Chacha Mangu, Norbert Heinrich, Andiyam Thierry Ouédraogo, Julia Tabatabai, Boubacar Coulibaly, José Francisco Fernandes, Aurélia Souares

Source: Tropical medicine & international health, Vol. 26, No 7 (2021) pp. 810-822

Subject Terms: Infectious Diseases, Public Health, Environmental and Occupational Health, Parasitology, Phylogenetic tree, Virus, Virology, GenBank, Rhinovirus, medicine.disease_cause, medicine, Genotype, Tanzania, biology.organism_classification, biology, Hypervariable region, Molecular epidemiology, parasitic diseases, virus diseases, respiratory system, viruses, ddc:616, Africa, RSV, Africa South of the Sahara, Burkina Faso, Child, Preschool, Female, Gabon, Ghana, Glycosylation, Humans, Infant, Male, Molecular Epidemiology / methods, Phylogeny, Polymerase Chain Reaction / methods, Respiratory Syncytial Virus Infections / diagnosis, Respiratory Syncytial Virus Infections / genetics, Respiratory Syncytial Virus, Human / genetics, Sequence Analysis, DNA / methods, Genotypes, Children

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e84cee029a76549ebd30aeb76258156a
https://doi.org/10.1111/tmi.13573

8
A practical guide to cancer subclonal reconstruction from DNA sequencing

Authors: David C. Wedge, Amit G. Deshwar, Adriana Salcedo, Maxime Tarabichi, Quaid Morris, Paul C. Boutros, Máire Ni Leathlobhair, Jeff Wintersinger, Peter Van Loo

Source: Tarabichi, M, Salcedo, A, Deshwar, A G, Ni Leathlobhair, M, Wintersinger, J, Wedge, D C, Van Loo, P, Morris, Q D & Boutros, P C 2021, ' A practical guide to cancer subclonal reconstruction from DNA sequencing ', Nature Methods, vol. 18, no. 2, pp. 144-155 . https://doi.org/10.1038/s41592-020-01013-2
Nature methods, vol 18, iss 2
Nat Methods

Subject Terms: Algorithms, DNA, Neoplasm/genetics, Humans, Neoplasms/genetics, Polymorphism, Single Nucleotide, Sequence Analysis, DNA/methods, Neoplasms, DNA, Neoplasm, Sequence Analysis, Polymorphism, Single Nucleotide, Cancer, Human Genome, Genetics, Developmental Biology, Biological Sciences, Technology, Medical and Health Sciences, Article, Cell Biology, Molecular Biology, Biochemistry, Biotechnology, Pillar, Computational biology, Cancer evolution, Computer science, Reconstruction method, Tumour heterogeneity, DNA sequencing, Quality assessment, medicine.disease, medicine, Multiple tumors

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f05d274be748f13fb495dcdb7b0ad6d7
https://www.research.manchester.ac.uk/portal/en/publications/a-practical-guide-to-cancer-subclonal-reconstruction-from-dna-sequencing(500859e1-a1de-452f-b2ca-0db6ec57e65b).html

9
Gut microbiota alterations in response to sleep length among African-origin adults

Authors: Sirimon Reutrakul, Pascal Bovet, Stephanie J. Crowley, Walter F. Riesen, Wolfgang Korte, Jack A. Gilbert, Brian T. Layden, Jacob Plange-Rhule, Dale E. Rae, Kweku Bedu-Addo, Amy Luke, Lara R. Dugas, Estelle V. Lambert, Na Fei, Candice Choo-Kang, Terrence Forrester

Contributors: Lembo, Francesca

Source: PLoS ONE, Vol 16, Iss 9, p e0255323 (2021)
PloS one, vol 16, iss 9
PloS one, vol. 16, no. 9, pp. e0255323
PLoS ONE

Subject Terms: Medicine, Science, Multidisciplinary, Physiology, Sleep in non-human animals, Gut flora, biology.organism_classification, biology, Microbiome, African origin, Mechanism (biology), Metabolic syndrome, medicine.disease, medicine, Population, education.field_of_study, education, Obesity, Clinical Research, Aging, Sleep Research, Genetics, Neurosciences, 2.1 Biological and endogenous factors, General Science & Technology, Feces, Humans, Bacteria, RNA, Ribosomal, 16S, Cohort Studies, Sequence Analysis, DNA, Sleep, Adult, Middle Aged, South Africa, Ghana, Jamaica, United States, Female, Male, Surveys and Questionnaires, Sleep Wake Disorders, Gastrointestinal Microbiome, Aetiology, Bacteria/classification, Bacteria/genetics, Bacteria/isolation & purification, Feces/microbiology, Gastrointestinal Microbiome/physiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA/methods, Sleep/physiology, Sleep Wake Disorders/microbiology, Research Article, Biology and Life Sciences, Physiological Processes, Organisms, Gut Bacteria, Biochemistry, Nucleic acids, Non-coding RNA, Ribosomal RNA, Ribosomes, Cell biology, Cellular structures and organelles, Computer and Information Sciences, Network Analysis, Centrality, Medicine and Health Sciences, Epidemiology, Medical Risk Factors, Physiological Parameters, Body Weight, Microbiology, Medical Microbiology, Genomics, Microbial Genomics, Physical Sciences, Chemistry, Chemical Compounds, Organic Compounds, Amino Acids, Basic Amino Acids, Lysine, Organic Chemistry, Proteins

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https://doaj.org/article/5682431fbe4642638db4d1f8e25fad75

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10
Insufficient evidence for a role of SERPINF1 in otosclerosis

Authors: Hanne Valgaeren, Anne Schepers, Geert Vandeweyer, Ingeborg Dhooge, Henricus P. M. Kunst, Alexander Hoischen, Matthias Beyens, Isabelle Schatteman, Erik Fransen, Manou Sommen, Vedat Topsakal, Guy Van Camp, Diego Zanetti, Alexander M. Huber, Isabelle Schrauwen

Contributors: Surgical clinical sciences, Ear, nose & throat, Clinical sciences, University of Zurich, Van Camp, Guy

Source: Molecular genetics and genomics
Molecular Genetics and Genomics, 294, 1001-1006

Subject Terms: Genetics, Molecular Biology, General Medicine, Locus (genetics), Case-control study, Otosclerosis, medicine.disease, medicine, Biology, Etiology, Genetic variation, Hearing loss, medicine.symptom, Human genetics, Disease, Chemistry, Human medicine, 3' Untranslated Regions, 5' Untranslated Regions, Case-control studies, Eye Proteins/genetics, Female, Humans, Male, Nerve Growth Factors/genetics, Otosclerosis/genetics, Pedigree, Sequence Analysis, DNA/methods, Serpins/genetics, Otorhinolaryngology, surgery, 610 Medicine & health, 10045 Clinic for Otorhinolaryngology, 1312 Molecular Biology, 1311 Genetics

File Description: 10.1007_s00438-019-01558-8.pdf - application/pdf

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https://doi.org/10.1007/s00438-019-01558-8

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11
Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions

Authors: Junbiao Dai, Daniel Schindler, Yizhi Cai

Source: Current Opinion in Chemical Biology
Schindler, D, Dai, J & Cai, Y 2018, ' Synthetic genomics : a new venture to dissect genome fundamentals and engineer new functions ', Current Opinion in Chemical Biology, vol. 46, pp. 56-62 . https://doi.org/10.1016/j.cbpa.2018.04.002

Subject Terms: Biochemistry, Analytical Chemistry, DNA, chemistry.chemical_compound, chemistry, Computer science, Genomics, Synthetic biology, Sequence analysis, Synthetic genomics, Gene, Genome, Computational biology, DNA sequencing, Article, Animals, DNA/chemical synthesis, Genes, Synthetic, Genetic Engineering/methods, Genomics/methods, Humans, Sequence Analysis, DNA/methods, Synthetic Biology/methods

File Description: application/vnd.openxmlformats-officedocument.wordprocessingml.document

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https://doi.org/10.1016/j.cbpa.2018.04.002

12
SNCA 3′ UTR Genetic Variants in Patients with Parkinson’s Disease

Authors: Fran Borovečki, Kristina Gotovac Jerčić, Antonela Blažeković

Source: Biomolecules
Biomolecules, Vol 11, Iss 1799, p 1799 (2021)

Subject Terms: Molecular Biology, Biochemistry, Context (language use), Genetic association, Linkage disequilibrium, Population, education.field_of_study, education, Genetics, Genotype frequency, Untranslated region, Allele, Biology, Single-nucleotide polymorphism, Article, Parkinson’s disease, 3′ UTR, alpha-synuclein, PINK1, linkage disequilibrium, risk loci, next generation sequencing, single nucleotide polymorphism, Microbiology, QR1-502, 3' Untranslated Regions, Aged, Case-Control Studies, Croatia, Female, Gene Expression Regulation, Genetic Predisposition to Disease, Genome-Wide Association Study, High-Throughput Nucleotide Sequencing, Humans, Male, Middle Aged, Parkinson Disease / genetics, Polymorphism, Single Nucleotide, Sequence Analysis, DNA / methods, alpha-Synuclein / genetics

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https://doi.org/10.3390/biom11121799

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13
Epidemiology of yeast species causing bloodstream infection in Tehran, Iran (2015-2017); superiority of 21-plex PCR over the Vitek 2 system for yeast identification

Authors: Kazem Ahmadikia, Mahsa Doomanlou, Neda Alijani, Niloofar Rashidi, Alireza Abdollahi, Weihua Pan, Ahmad Elmimoghaddam, Sassan Rezaei, Mohammad Kord, Teun Boekhout, Ayda Maleki, Amir Arastehfar, Sadegh Khodavaisy, Roshanak Daie Ghazvini, Seyed Jamal Hashemi, Mohammadreza Salehi

Contributors: Westerdijk Fungal Biodiversity Institute - Yeast Research, Westerdijk Fungal Biodiversity Institute, Evolutionary and Population Biology (IBED, FNWI)

Source: Journal of Medical Microbiology, 69(5), 712-720. Society for General Microbiology
Journal of Medical Microbiology

Subject Terms: Aged, Aged, 80 and over, DNA, Intergenic, Female, Fungemia/diagnosis, History, 21st Century, Humans, Iran/epidemiology, Male, Middle Aged, Multiplex Polymerase Chain Reaction/methods, Sequence Analysis, DNA/methods, Yeasts/classification, Short Communication, Medical Mycology, bloodstream infections, candidaemia, 21-plex PCR, Vitek 2, 80 and over, DNA, Intergenic, History, 21st Century, Sequence Analysis, DNA/methods, Microbiology (medical), General Medicine, Microbiology, Fluconazole, medicine.drug, medicine, Candida albicans, biology.organism_classification, biology, Corpus albicans, Yeast, Candida glabrata, Candida parapsilosis, Candida krusei, Candida tropicalis

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https://pure.knaw.nl/portal/en/publications/7271ce71-e573-46a5-b012-ba73c3935c81

14
Using an integrative machine learning approach utilising homology modelling to clinically interpret genetic variants:CACNA1F as an exemplar

Authors: Graeme C.M. Black, Mitra Kabir, Shalaw R. Sallah, Jamie M Ellingford, Stephanie Barton, Rachel L. Taylor, Simon C. Lovell, Nicholas Lench, Amro Safadi, Panagiotis I. Sergouniotis, Simon C Ramsden

Source: Sallah, S R, Sergouniotis, P I, Barton, S, Ramsden, S, Taylor, R L, Safadi, A, Kabir, M, Ellingford, J M, Lench, N, Lovell, S C & Black, G C M 2020, ' Using an integrative machine learning approach utilising homology modelling to clinically interpret genetic variants : CACNA1F as an exemplar ', European Journal of Human Genetics, vol. 28, no. 9, pp. 1274-1282 . https://doi.org/10.1038/s41431-020-0623-y
European Journal of Human Genetics

Subject Terms: Animals, Calcium Channels, L-Type/chemistry, Genetic Testing/methods, Humans, Machine Learning, Mutation, Sequence Alignment/methods, Sequence Analysis, DNA/methods, Structural Homology, Protein, Article, Genetic databases, Genetic testing, Genetics (clinical), Genetics, Incomplete congenital stationary night blindness, Computer science, Genetic variants, Pathogenicity, In silico, DNA sequencing, Receiver operating characteristic, Computational biology, Homology (biology), Precision and recall

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd2c6a1665947a14b79b9929408165c7
https://www.research.manchester.ac.uk/portal/en/publications/using-an-integrative-machine-learning-approach-utilising-homology-modelling-to-clinically-interpret-genetic-variants(f87a43f7-3c53-4a5b-a60d-85b2d0fb18ce).html

16
VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions

Authors: Freeman, Peter J., Hart, Reece K., Gretton, Liam J., Brookes, Anthony J., Dalgleish, Raymond

Source: Human Mutation
Freeman, P J, Hart, R K, Gretton, L J, Brookes, A J & Dalgleish, R 2018, ' VariantValidator : Accurate validation, mapping, and formatting of sequence variation descriptions ', Human Mutation, vol. 39, no. 1, pp. 61-68 . https://doi.org/10.1002/humu.23348

Subject Terms: Informatics, HGVS variant nomenclature, reference sequences, sequence variants, sequence variation, validation, variant call format, VCF, Chromosome Mapping/methods, Computational Biology/methods, Databases, Genetic, Exons, Genetic Variation, Humans, Introns, Reproducibility of Results, Sequence Analysis, DNA/methods, Software, User-Computer Interface, Web Browser

Access URL: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::8698bce7463555d9ce5cd93bcb598d92
http://europepmc.org/articles/PMC5765404

17
Xpert MTB/RIF and Xpert MTB/RIF Ultra for pulmonary tuberculosis and rifampicin resistance in adults

Authors: Nandini Dendukuri, Eleanor A Ochodo, Samuel G Schumacher, Karen R Steingart, Mikashmi Kohli, Deanna Tollefson, Jerry S Zifodya, David J. Horne, Madhukar Pai, Ian Schiller

Source: The Cochrane Database of Systematic Reviews

Subject Terms: Medicine General & Introductory Medical Sciences, mesh:Adult, mesh:Humans, mesh:Drug Resistance, Bacterial, mesh:Antibiotics, Antitubercular, mesh:Antibiotics, Antitubercular/therapeutic use, mesh:Mycobacterium tuberculosis, mesh:Mycobacterium tuberculosis/drug effects, mesh:Mycobacterium tuberculosis/genetics, mesh:Mycobacterium tuberculosis/isolation & purification, mesh:Polymerase Chain Reaction, mesh:Polymerase Chain Reaction/methods, mesh:Rifampin, mesh:Rifampin/therapeutic use, mesh:Sensitivity and Specificity, mesh:Sequence Analysis, DNA, mesh:Sequence Analysis, DNA/methods, mesh:Tuberculosis, Pulmonary, mesh:Tuberculosis, Pulmonary/diagnosis, mesh:Tuberculosis, Pulmonary/drug therapy, bacterial infections and mycoses, polycyclic compounds, qv_268, wf_200, wf_300, Pharmacology (medical), Antibiotics, medicine.drug_class, medicine, Virology, Pulmonary tuberculosis, Rifampicin, medicine.drug, Rifampicin resistance, Mycobacterium tuberculosis, biology.organism_classification, biology, business.industry, business, Tuberculosis, medicine.disease, Drug resistance, Extrapulmonary tuberculosis

File Description: application/pdf

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http://europepmc.org/articles/PMC6555588

18
Mutation spectrum and clinical investigation of achromatopsia patients with mutations in the GNAT2 gene

Authors: Bernd Wissinger, Martin McKibbin, Line Kessel, Julia Felden, Carmen Ayuso, Ingele Casteels, Manir Ali, Bernhard Jurklies, Thomas Rosenberg, Katarina Stingl, Isabelle Audo, Isabelle Meunier, Britta Baumann, Béatrice Bocquet, Susanne Kohl, Blanca Garcia-Sandoval, Birgit Lorenz, Thomy de Ravel, Ulrich Kellner, Maria Vadalà, Klaus Rüther, Samuel G. Jacobson

Contributors: Felden J, Baumann B, Ali M, Audo I, Ayuso C, Bocquet B, Casteels I, Garcia-Sandoval B, Jacobson SG, Jurklies B, Kellner U, Kessel L, Lorenz B, McKibbin M, Meunier I, de Ravel T, Rosenberg T, Rüther K, Vadala M, Wissinger B, Stingl K, Kohl S., Faculty of Economic and Social Sciences and Solvay Business School, Medical Genetics

Source: Human Mutation.

Subject Terms: Genetics (clinical), Genetics, Copy-number variation, Breakpoint, Gene duplication, Exon, Mutation, medicine.disease_cause, medicine, Photoreceptor outer segment, GNAT2, Biology, Achromatopsia, medicine.disease, genetic structures, sense organs, eye diseases, achromatopsia, copy number variations, GNAT2, mutations, transducin, Settore MED/30 - Malattie Apparato Visivo, Settore BIO/18 - Genetica, Adolescent, Adult, Aged, Child, Child, preschool, Color Vision Defects/genetics, DNA Copy Number Variations, Exons, Female, Genetic Predisposition to Disease, Heterotrimeric GTP-Binding Proteins/genetics, Humans, Infant, Male, Middle Aged, mutation, Pedigree, Sequence Analysis, DNA/methods, young adult

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::782e62f1eae6cf6ff41582275525763b
https://doi.org/10.1002/humu.23768

20
Use of shotgun metagenomics for the identification of protozoa in the gut microbiota of healthy individuals from worldwide populations with various industrialization levels

Authors: Ana Lokmer, Alain Froment, Magali Chabé, Eric Viscogliosi, Laure Ségurel, Nausicaa Gantois, Amandine Cian

Contributors: Eco-Anthropologie et Ethnobiologie (EAE), Muséum national d'Histoire naturelle (MNHN)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 (CIIL), Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille)-Centre National de la Recherche Scientifique (CNRS), Institut de Recherche pour le Développement (IRD), Patrimoines locaux, Environnement et Globalisation (PALOC), Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU), This work was supported by the ANR MICROREGAL (ANR-15-CE02-0003), the Centre National de la Recherche Scientifique (LS) and the Institut Pasteur of Lille. AC was supported by a PhD fellowship from the University of Lille 2 and the Institut Pasteur of Lille., We wish to thank the 'Plateau Technique de Paléogénomique et Génétique Moléculaire (MNHN, site du Musée de l’Homme) for their technical help, Centre National de la Recherche Scientifique (CNRS)-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille)-Université de Lille-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Éco-Anthropologie (EA (UMR_7206)), Université Paris Diderot - Paris 7 (UPD7)-Muséum National d'Histoire Naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Schistosomiase, paludisme et inflammation, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille, Droit et Santé, Centre d’Infection et d’Immunité de Lille (CIIL) - U1019 - UMR 8204 (CIIL), Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)

Source: PLoS ONE
PLoS ONE, Public Library of Science, 2019, 14 (2), pp.e0211139. ⟨10.1371/journal.pone.0211139⟩
PLoS ONE, Public Library of Science, 2019, ⟨10.1371/journal.pone.0211139⟩
PLoS ONE, 2019, 14 (2), pp.e0211139. ⟨10.1371/journal.pone.0211139⟩
PLoS ONE, Vol 14, Iss 2, p e0211139 (2019)

Subject Terms: MESH: Adult, MESH: Aged, MESH: Metagenomics/methods, MESH: Middle Aged, MESH: Blastocystis/classification, MESH: Peru/epidemiology, MESH: Prevalence, MESH: RNA, Ribosomal, 16S/genetics, MESH: Sequence Analysis, DNA/methods, MESH: Tanzania/epidemiology, MESH: United States/epidemiology, MESH: Blastocystis/genetics, MESH: Entamoeba/isolation & purification, MESH: Blastocystis/isolation & purification, MESH: Cameroon/epidemiology, MESH: DNA, Ribosomal/genetics, MESH: Developed Countries, MESH: Entamoeba/classification, MESH: Entamoeba/genetics, MESH: Feces/parasitology, MESH: Female, MESH: Gastrointestinal Tract/parasitology, MESH: Healthy Volunteers, MESH: Humans, MESH: Italy/epidemiology, MESH: Male, [SDV.MP.PRO]Life Sciences [q-bio]/Microbiology and Parasitology/Protistology, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, parasitic diseases, [SDV]Life Sciences [q-bio], Medicine, Science, Research Article, Biology and Life Sciences, Organisms, Eukaryota, Protozoans, Parasitic Protozoans, Blastocystis, Genetics, Genomics, Metagenomics, People and Places, Geographical Locations, Africa, Cameroon, Research and Analysis Methods, Database and Informatics Methods, Bioinformatics, Sequence Analysis, Sequence Alignment, Biochemistry, Nucleic acids, RNA, Non-coding RNA, Ribosomal RNA, Ribosomes, Cell biology, Cellular structures and organelles, Tanzania, Multidisciplinary, biology.organism_classification, biology, Feces, Zoology, Protozoa, Gut flora, Entamoeba

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