Search Results - "Pervolarakis N"

1

Academic Journal

Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis.

Authors: Nee K; Department of Biological Chemistry, University of California, Irvine, CA, USA., Ma D; Department of Biological Chemistry, University of California, Irvine, CA, USA., Nguyen QH; Department of Biological Chemistry, University of California, Irvine, CA, USA., Pein M; Department of Biological Chemistry, University of California, Irvine, CA, USA., Pervolarakis N; Department of Biological Chemistry, University of California, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, CA, USA., Insua-Rodríguez J; Department of Biological Chemistry, University of California, Irvine, CA, USA., Gong Y; Department of Biological Chemistry, University of California, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, CA, USA., Hernandez G; Department of Biological Chemistry, University of California, Irvine, CA, USA., Alshetaiwi H; Department of Biological Chemistry, University of California, Irvine, CA, USA.; Department of Pathology, University of Hail, Hail, Saudi Arabia., Williams J; Department of Biological Chemistry, University of California, Irvine, CA, USA., Rauf M; Department of Biological Chemistry, University of California, Irvine, CA, USA., Dave KR; Department of Biological Chemistry, University of California, Irvine, CA, USA., Boyapati K; Department of Biological Chemistry, University of California, Irvine, CA, USA., Hasnain A; Department of Biological Chemistry, University of California, Irvine, CA, USA., Calderon C; Department of Biological Chemistry, University of California, Irvine, CA, USA., Markaryan A; Department of Biological Chemistry, University of California, Irvine, CA, USA., Edwards R; Department of Pathology and Laboratory Medicine, University of California Irvine Medical Center, Orange, CA, USA., Lin E; Department of Surgery, University of California Irvine Medical Center, Orange, CA, USA., Parajuli R; Department of Surgery, University of California Irvine Medical Center, Orange, CA, USA., Zhou P; Department of Mathematics, University of California, Irvine, CA, USA.; The NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA, USA., Nie Q; Department of Mathematics, University of California, Irvine, CA, USA.; The NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA, USA., Shalabi S; Beckman Research Institute at City of Hope, Duarte, CA, USA., LaBarge MA; Beckman Research Institute at City of Hope, Duarte, CA, USA., Kessenbrock K; Department of Biological Chemistry, University of California, Irvine, CA, USA. kai.kessenbrock@uci.edu.

Source: Nature genetics [Nat Genet] 2023 Mar 13. Date of Electronic Publication: 2023 Mar 13.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

2

Academic Journal

Weekend Light Shifts Evoke Persistent Drosophila Circadian Neural Network Desynchrony.

Authors: Nave C; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Roberts L; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Hwu P; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Estrella JD; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Vo TC; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Nguyen TH; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Bui TT; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Rindner DJ; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697., Pervolarakis N; Center for Complex Biological Systems, University of California, Irvine, Irvine, California 92697., Shaw PJ; Department of Anatomy and Neurobiology, Washington University in St. Louis, St. Louis, Missouri 63110., Leise TL; Department of Mathematics and Statistics, Amherst College, Amherst, Massachusetts 01002., Holmes TC; Department of Physiology and Biophysics, University of California, Irvine, Irvine, California 92697 tholmes@uci.edu.

Source: The Journal of neuroscience : the official journal of the Society for Neuroscience [J Neurosci] 2021 Jun 16; Vol. 41 (24), pp. 5173-5189. Date of Electronic Publication: 2021 Apr 30.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Society for Neuroscience Country of Publication: United States NLM ID: 8102140 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1529-2401 (Electronic) Linking ISSN: 02706474 NLM ISO Abbreviation: J Neurosci Subsets: MEDLINE

3

Academic Journal

An in vitro vascularized micro-tumor model of human colorectal cancer recapitulates in vivo responses to standard-of-care therapy.

Authors: Hachey SJ; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA. cchughes@uci.edu., Movsesyan S, Nguyen QH, Burton-Sojo G, Tankazyan A, Wu J, Hoang T, Zhao D, Wang S, Hatch MM, Celaya E, Gomez S, Chen GT, Davis RT, Nee K, Pervolarakis N, Lawson DA, Kessenbrock K, Lee AP, Lowengrub J, Waterman ML, Hughes CCW

Source: Lab on a chip [Lab Chip] 2021 Apr 07; Vol. 21 (7), pp. 1333-1351. Date of Electronic Publication: 2021 Feb 19.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Royal Society of Chemistry Country of Publication: England NLM ID: 101128948 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1473-0189 (Electronic) Linking ISSN: 14730189 NLM ISO Abbreviation: Lab Chip Subsets: MEDLINE

MeSH Terms: Antineoplastic Agents*/pharmacology , Antineoplastic Agents*/therapeutic use , Colorectal Neoplasms*/drug therapy, Drug Evaluation, Preclinical ; Humans ; Lab-On-A-Chip Devices ; Tumor Microenvironment

4

Academic Journal

Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity.

Authors: Nguyen QH; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, 92697, USA., Pervolarakis N; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, 92697, USA., Blake K; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, 92697, USA., Ma D; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, 92697, USA., Davis RT; Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA, 92697, USA., James N; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, 92697, USA., Phung AT; Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA, 92697, USA., Willey E; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco, CA, 94143-0452, USA., Kumar R; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco, CA, 94143-0452, USA., Jabart E; ProteinSimple, 3001 Orchard Parkway, San Jose, CA, 95134, USA., Driver I; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco, CA, 94143-0452, USA., Rock J; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco, CA, 94143-0452, USA., Goga A; Department of Cell and Tissue Biology, University of California, San Francisco, CA, 94143-0452, USA., Khan SA; Department of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA., Lawson DA; Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA, 92697, USA., Werb Z; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco, CA, 94143-0452, USA. zena.werb@ucsf.edu., Kessenbrock K; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, 92697, USA. kai.kessenbrock@uci.edu.

Source: Nature communications [Nat Commun] 2018 May 23; Vol. 9 (1), pp. 2028. Date of Electronic Publication: 2018 May 23.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

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5

Academic Journal

Single-Cell Transcriptome Analysis Workflow for Splenic Myeloid-Derived Suppressor Cells from Murine Breast Cancer Models.

Authors: Alshetaiwi H; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, USA.; Department of Pathology, University of Hail, Hail, Saudi Arabia., Pervolarakis N; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, USA., Nguyen QH; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, USA., Kessenbrock K; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, USA. kai.kessenbrock@uci.edu.

Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2236, pp. 177-187.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

MeSH Terms: Gene Expression Profiling/*methods , Mammary Neoplasms, Animal/*pathology , Myeloid-Derived Suppressor Cells/*metabolism , Single-Cell Analysis/*methods , Spleen/*pathology, Animals ; Computational Biology ; Female ; Mice, Transgenic ; Quality Control ; Reproducibility of Results ; Workflow

6

Academic Journal

Integrated Single-Cell Transcriptomics and Chromatin Accessibility Analysis Reveals Regulators of Mammary Epithelial Cell Identity.

Authors: Pervolarakis N; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Nguyen QH; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Williams J; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Gong Y; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Gutierrez G; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Sun P; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Jhutty D; 10X Genomics, 7068 Koll Center Parkway, Suite 401, Pleasanton, CA 94566, USA., Zheng GXY; 10X Genomics, 7068 Koll Center Parkway, Suite 401, Pleasanton, CA 94566, USA., Nemec CM; 10X Genomics, 7068 Koll Center Parkway, Suite 401, Pleasanton, CA 94566, USA., Dai X; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Watanabe K; RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. Electronic address: kazuhide.watanabe@riken.jp., Kessenbrock K; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA. Electronic address: kai.kessenbrock@uci.edu.

Source: Cell reports [Cell Rep] 2020 Oct 20; Vol. 33 (3), pp. 108273.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

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7

Academic Journal

Defining the emergence of myeloid-derived suppressor cells in breast cancer using single-cell transcriptomics.

Authors: Alshetaiwi H; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA.; Department of Pathology, University of Hail, Hail 2440, Saudi Arabia., Pervolarakis N; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., McIntyre LL; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA., Ma D; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Nguyen Q; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Rath JA; Ludwig Institute for Cancer Research, University of Lausanne, Epalinges 1066, Switzerland., Nee K; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Hernandez G; Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA 92697, USA., Evans K; Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA 92697, USA., Torosian L; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Silva A; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA., Walsh C; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA., Kessenbrock K; Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA. kai.kessenbrock@uci.edu.

Source: Science immunology [Sci Immunol] 2020 Feb 21; Vol. 5 (44).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 101688624 Publication Model: Print Cited Medium: Internet ISSN: 2470-9468 (Electronic) Linking ISSN: 24709468 NLM ISO Abbreviation: Sci Immunol Subsets: MEDLINE

8

Academic Journal

Tumour heterogeneity and metastasis at single-cell resolution.

Authors: Lawson DA; Department of Physiology and Biophysics, University of California, Irvine, CA, USA. dalawson@uci.edu.; Chao Family Comprehensive Cancer Center, University of California, Irvine, CA, USA. dalawson@uci.edu., Kessenbrock K; Chao Family Comprehensive Cancer Center, University of California, Irvine, CA, USA. kai.kessenbrock@uci.edu.; Department of Biological Chemistry, University of California, Irvine, CA, USA. kai.kessenbrock@uci.edu., Davis RT; Department of Physiology and Biophysics, University of California, Irvine, CA, USA., Pervolarakis N; Department of Biological Chemistry, University of California, Irvine, CA, USA.; Center for Complex Biological Systems, University of California, Irvine, CA, USA., Werb Z; Department of Anatomy, and Helen Diller Comprehensive Cancer Center, University of California, San Francisco, CA, USA.

Source: Nature cell biology [Nat Cell Biol] 2018 Dec; Vol. 20 (12), pp. 1349-1360. Date of Electronic Publication: 2018 Nov 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review

Journal Info: Publisher: Macmillan Magazines Ltd Country of Publication: England NLM ID: 100890575 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4679 (Electronic) Linking ISSN: 14657392 NLM ISO Abbreviation: Nat Cell Biol Subsets: MEDLINE

9

Academic Journal

Experimental Considerations for Single-Cell RNA Sequencing Approaches.

Authors: Nguyen QH; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, United States., Pervolarakis N; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA, United States., Nee K; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, United States., Kessenbrock K; Department of Biological Chemistry, University of California, Irvine, Irvine, CA, United States.

Source: Frontiers in cell and developmental biology [Front Cell Dev Biol] 2018 Sep 04; Vol. 6, pp. 108. Date of Electronic Publication: 2018 Sep 04 (Print Publication: 2018).

Publication Type: Journal Article; Review

Journal Info: Publisher: Frontiers Media S.A Country of Publication: Switzerland NLM ID: 101630250 Publication Model: eCollection Cited Medium: Print ISSN: 2296-634X (Print) Linking ISSN: 2296634X NLM ISO Abbreviation: Front Cell Dev Biol Subsets: PubMed not MEDLINE

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10

Academic Journal

Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients.

Authors: Nusbaum DJ; Keck School of Medicine of the University of Southern California, Department of Pediatrics, Los Angeles, CA, USA 1975 Zonal Ave, Los Angeles, CA, USA 90033., Sun F; Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA 1050 Childs Way, RRI201, Los Angeles, CA, USA 90089., Ren J; Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA 1050 Childs Way, RRI201, Los Angeles, CA, USA 90089., Zhu Z; Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA 1050 Childs Way, RRI201, Los Angeles, CA, USA 90089., Ramsy N; Keck School of Medicine of the University of Southern California, Department of Pediatrics, Los Angeles, CA, USA 1975 Zonal Ave, Los Angeles, CA, USA 90033., Pervolarakis N; Center for Complex Biological Systems, University of California, Irvine, CA, USA 2620 Biological Sciences III, Irvine, CA, USA 92697., Kunde S; Helen DeVos Children's Hospital, Grand Rapids, MI, USA 35 Michigan St NE, Ste 4150, Grand Rapids, MI, USA 49503., England W; Department of Molecular Biology and Biochemistry, University of California, Irvine, CA, USA 3315 McGaugh Hall, Irvine, CA, USA 92697., Gao B; West Coast Metabolomics Center, University of California, Davis, CA, USA 451 Health Sciences Drive, Davis, CA, USA 95616., Fiehn O; West Coast Metabolomics Center, University of California, Davis, CA, USA 451 Health Sciences Drive, Davis, CA, USA 95616.; Department of Biochemistry, Faculty of Sciences, King Abdulaziz University, Jeddah, Saudi Arabia P.O. Box 80203, Jeddah, Saudi Arabia 21589., Michail S; Keck School of Medicine of the University of Southern California, Department of Pediatrics, Los Angeles, CA, USA 1975 Zonal Ave, Los Angeles, CA, USA 90033., Whiteson K; Department of Molecular Biology and Biochemistry, University of California, Irvine, CA, USA 3315 McGaugh Hall, Irvine, CA, USA 92697.

Source: FEMS microbiology ecology [FEMS Microbiol Ecol] 2018 Sep 01; Vol. 94 (9).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 8901229 Publication Model: Print Cited Medium: Internet ISSN: 1574-6941 (Electronic) Linking ISSN: 01686496 NLM ISO Abbreviation: FEMS Microbiol Ecol Subsets: MEDLINE

SCR Disease Name: Pediatric ulcerative colitis

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11

Academic Journal

Diverse regulation of mammary epithelial growth and branching morphogenesis through noncanonical Wnt signaling.

Authors: Kessenbrock K; Department of Biological Chemistry, University of California, Irvine, CA 92697., Smith P; Department of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, CA 95064., Steenbeek SC; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco CA 94143-0452., Pervolarakis N; Department of Biological Chemistry, University of California, Irvine, CA 92697., Kumar R; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco CA 94143-0452., Minami Y; Division of Cell Physiology, Department of Physiology and Cell Biology, Graduate School of Medicine, Kobe University, Kobe, Hyogo, 650-0017, Japan., Goga A; Department of Cell and Tissue Biology, University of California, San Francisco, CA 94143-0452., Hinck L; Department of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, CA 95064; zena.werb@ucsf.edu lhinck@ucsc.edu., Werb Z; Department of Anatomy and Biomedical Sciences Program, University of California, San Francisco CA 94143-0452; zena.werb@ucsf.edu lhinck@ucsc.edu.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2017 Mar 21; Vol. 114 (12), pp. 3121-3126. Date of Electronic Publication: 2017 Mar 07.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

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