Authors: Yim, KH, Prince, TL, Qu, S, Bai, F, Jennings, PA, Onuchic, JN, Theodorakis, EA, Neckers, L

Source: Yim, KH; Prince, TL; Qu, S; Bai, F; Jennings, PA; Onuchic, JN; et al.(2016). Gambogic acid identifies an isoform-specific druggable pocket in the middle domain of Hsp90 beta. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113(33), E4801-E4809. doi: 10.1073/pnas.1606655113. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/6s88r49d

Subject Terms: molecular chaperone, heat-shock protein 90, isoform-specific inhibitor, molecular docking, caged xanthone

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=od_______325::755bc1023e8281c88c114853f6bf2d87
http://www.escholarship.org/uc/item/6s88r49d

Authors: Lu W; Center for Theoretical Biological Physics, & Department of Physics and Astronomy, Rice University, Houston, Texas, United States of America., Onuchic JN; Center for Theoretical Biological Physics, & Department of Physics and Astronomy, Rice University, Houston, Texas, United States of America.; Department of Chemistry, & Department of Biosciences, Rice University, Houston, Texas, United States of America., Di Pierro M; Department of Physics, Northeastern University, Boston, Massachusetts, United States of America.; Center for Theoretical Biological Physics, Northeastern University, Boston, Massachusetts, United States of America.

Source: PLoS computational biology [PLoS Comput Biol] 2023 Mar 27; Vol. 19 (3), pp. e1011013. Date of Electronic Publication: 2023 Mar 27 (Print Publication: 2023).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Authors: Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. vinicius.contessoto@rice.edu.; Instituto de Biociências, Letras e Ciências Exatas, UNESP - Univ. Estadual Paulista, Departamento de Física, São José do Rio Preto, SP, Brazil. vinicius.contessoto@rice.edu., Dudchenko O; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA.; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA., Aiden EL; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA.; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA., Wolynes PG; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA.; Department of Physics & Astronomy, Rice University, Houston, TX, USA.; Department of Chemistry, Rice University, Houston, TX, USA.; Department of Biosciences, Rice University, Houston, TX, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. jonuchic@rice.edu.; Department of Physics & Astronomy, Rice University, Houston, TX, USA. jonuchic@rice.edu.; Department of Chemistry, Rice University, Houston, TX, USA. jonuchic@rice.edu.; Department of Biosciences, Rice University, Houston, TX, USA. jonuchic@rice.edu., Di Pierro M; Department of Physics, Northeastern University, Boston, MA, USA. dipierro@northeastern.edu.; Center for Theoretical Biological Physics, Northeastern University, Boston, MA, USA. dipierro@northeastern.edu.

Source: Nature communications [Nat Commun] 2023 Jan 19; Vol. 14 (1), pp. 326. Date of Electronic Publication: 2023 Jan 19.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Authors: Dodero-Rojas E; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. Electronic address: https://twitter.com/edoderoroja., Mello MF; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. Electronic address: https://twitter.com/_matheusfmello., Brahmachari S; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. Electronic address: https://twitter.com/sumitabha590., Oliveira Junior AB; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA., Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. Electronic address: https://twitter.com/Vini_Contessoto., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA; Department of Physics & Astronomy, Rice University, Houston, TX, USA; Department of Chemistry, Rice University, Houston, TX, USA; Department of Biosciences, Rice University, Houston, TX, USA. Electronic address: jonuchic@rice.edu.

Source: Journal of molecular biology [J Mol Biol] 2023 Aug 01; Vol. 435 (15), pp. 168180. Date of Electronic Publication: 2023 Jun 09.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

MeSH Terms: Epigenome*/genetics , Chromosomes*/metabolism, Humans ; Animals ; Mice ; Histones/metabolism ; Neural Networks, Computer ; Software ; Chromatin

Authors: Galbraith M; Center for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America.; Department of Physics and Astronomy, Rice University, Houston, Texas, United States of America., Bocci F; NSF-Simons Center for Multiscale Cell Fate research, University of California Irvine, California, United States of America., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America.; Department of Physics and Astronomy, Rice University, Houston, Texas, United States of America.; Department of Chemistry, Rice University, Houston, Texas, United States of America.; Department of Biosciences, Rice University, Houston, Texas, United States of America.

Source: PLoS computational biology [PLoS Comput Biol] 2022 Jul 21; Vol. 18 (7), pp. e1010306. Date of Electronic Publication: 2022 Jul 21 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Authors: Ruben BS; Center for Theoretical Biological Physics, Rice University, Houston, Texas; Biophysics PhD Program, Harvard University, Cambridge, Massachusetts. Electronic address: benruben@g.harvard.edu., Brahmachari S; Center for Theoretical Biological Physics, Rice University, Houston, Texas., Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, Texas., Cheng RR; Center for Theoretical Biological Physics, Rice University, Houston, Texas; Department of Chemistry, University of Kentucky, Lexington, Kentucky., Oliveira Junior AB; Center for Theoretical Biological Physics, Rice University, Houston, Texas., Di Pierro M; Department of Physics, Northeastern University, Boston, Massachusetts; Center for Theoretical Biological Physics, Northeastern University, Boston, Massachusetts., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, Texas; Department of Physics and Astronomy, Department of Chemistry, Department of BioSciences, Rice University, Houston, Texas.

Source: Biophysical journal [Biophys J] 2023 May 02; Vol. 122 (9), pp. 1633-1645. Date of Electronic Publication: 2023 Mar 22.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0370626 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1542-0086 (Electronic) Linking ISSN: 00063495 NLM ISO Abbreviation: Biophys J Subsets: MEDLINE

MeSH Terms: Chromatin*/metabolism , Chromosomes*, Cell Nucleus/metabolism ; Mitosis ; Cell Cycle

Authors: Brahmachari S; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA., Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA., Di Pierro M; Department of Physics, and Center for Theoretical Biological Physics, Northeastern University, Boston, MA 02115, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics and Astronomy, Department of Chemistry, Department of BioSciences, Rice University, Houston TX 77005, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2022 May 06; Vol. 50 (8), pp. 4258-4271.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Tripathi S; PhD Program in Systems, Synthetic, and Physical Biology, Rice University, Houston, TX, USA.; Center for Theoretical Biological Physics & Department of Physics, Northeastern University, Boston, MA, USA., Brahmachari S; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA.; Department of Physics and Astronomy, Department of Chemistry, & Department of Biosciences, Rice University, Houston, TX, USA., Levine H; Center for Theoretical Biological Physics & Department of Physics, Northeastern University, Boston, MA, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2022 Feb 22; Vol. 50 (3), pp. 1269-1279.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: de Oliveira AB Jr; Center for Theoretical Biological Physics, Rice University, Houston, Texas, USA., Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, Texas, USA., Hassan A; Department of Physics, Northeastern University, Dana Research Center, Boston, Massachusetts, USA.; Center for Theoretical Biological Physics, Northeastern University, Boston, Massachusetts, USA., Byju S; Department of Physics, Northeastern University, Dana Research Center, Boston, Massachusetts, USA.; Center for Theoretical Biological Physics, Northeastern University, Boston, Massachusetts, USA., Wang A; Center for Theoretical Biological Physics, Northeastern University, Boston, Massachusetts, USA., Wang Y; Department of Chemistry, Boston College, Chestnut Hill, Massachusetts, USA., Dodero-Rojas E; Center for Theoretical Biological Physics, Rice University, Houston, Texas, USA., Mohanty U; Department of Chemistry, Boston College, Chestnut Hill, Massachusetts, USA., Noel JK; Crystallography, Max Delbrück Center for Molecular Medicine, Berlin, Germany., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, Texas, USA.; Department of Physics & Astronomy, Rice University, Houston, Texas, USA.; Department of Chemistry, Rice University, Houston, Texas, USA.; Department of Biosciences, Rice University, Houston, Texas, USA., Whitford PC; Department of Physics, Northeastern University, Dana Research Center, Boston, Massachusetts, USA.; Center for Theoretical Biological Physics, Northeastern University, Boston, Massachusetts, USA.

Source: Protein science : a publication of the Protein Society [Protein Sci] 2022 Jan; Vol. 31 (1), pp. 158-172. Date of Electronic Publication: 2021 Nov 01.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Authors: Bononi A; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Wang Q; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005.; Hefei National Laboratory for Physical Sciences at the Microscale and Department of Physics, University of Science and Technology of China, Hefei, Anhui 230026, China., Zolondick AA; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813.; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822., Bai F; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005.; Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China., Steele-Tanji M; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Suarez JS; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Pastorino S; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Sipes A; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Signorato V; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Ferro A; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Novelli F; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Kim JH; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Minaai M; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813.; Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822., Takinishi Y; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Pellegrini L; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Napolitano A; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Xu R; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Farrar C; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Goparaju C; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Bassi C; Department of Translational Medicine LTTA Centre University of Ferrara, Ferrara 44121, Italy., Negrini M; Department of Translational Medicine LTTA Centre University of Ferrara, Ferrara 44121, Italy., Pagano I; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Sakamoto G; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Gaudino G; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Pass HI; Department of Cardiothoracic Surgery, New York University, New York, NY 10016., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005., Yang H; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813., Carbone M; Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, HI 96813.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2023 Jan 24; Vol. 120 (4), pp. e2217840120. Date of Electronic Publication: 2023 Jan 19.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

MeSH Terms: Hypoxia-Inducible Factor 1, alpha Subunit*/genetics , Mesothelioma*/genetics , Mesothelioma*/metabolism , Mesothelioma, Malignant*/genetics , Mesothelioma, Malignant*/complications , Ubiquitin Thiolesterase*/metabolism, Humans ; Heterozygote ; Mutation ; Tumor Suppressor Proteins/metabolism

Authors: Manna RN; School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005.; Department of Physics and Astronomy, Rice University, Houston, TX 77005.; Department of Chemistry, Rice University, Houston, TX 77005.; Department of Biosciences, Rice University, Houston, TX 77005., Jana B; School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2023 Jan 03; Vol. 120 (1), pp. e2215170120. Date of Electronic Publication: 2022 Dec 27.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

MeSH Terms: Spastic Paraplegia, Hereditary*/genetics , Neurodegenerative Diseases*/metabolism, Humans ; Kinesins/genetics ; Kinesins/metabolism ; Adenosine Triphosphate/metabolism ; Hydrolysis ; Asparagine/metabolism ; Mutation ; Tubulin/genetics ; Tubulin/metabolism ; Microtubules/metabolism

Authors: Galbraith M; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics and Astronomy, Rice University, Houston, TX77005, USA., Levine H; Center for Theoretical Biological Physics, Department of Physics, and Department of Bioengineering, Northeastern University, Boston, MA02115, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics and Astronomy, Rice University, Houston, TX77005, USA.; Department of Chemistry, Rice University, Houston, TX77005, USA.; Department of Biosciences, Rice University, Houston, TX77005, USA., Jia D; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.

Source: IScience [iScience] 2022 Dec 05; Vol. 26 (1), pp. 105719. Date of Electronic Publication: 2022 Dec 05 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE

Authors: Kohar V; The Jackson Laboratory, Bar Harbor, ME 04609, USA., Gordin D; The Jackson Laboratory, Bar Harbor, ME 04609, USA.; Center for Theoretical Biological Physics.; Department of Bioengineering., Katebi A; The Jackson Laboratory, Bar Harbor, ME 04609, USA.; Center for Theoretical Biological Physics.; Department of Bioengineering., Levine H; Center for Theoretical Biological Physics.; Department of Bioengineering.; Department of Physics, Northeastern University, Boston, MA 02115, USA., Onuchic JN; Center for Theoretical  Biological Physics.; Department of Physics and Astronomy.; Department of Chemistry.; Department of Biosciences, Rice University, Houston, TX 77005, USA., Lu M; The Jackson Laboratory, Bar Harbor, ME 04609, USA.; Center for Theoretical Biological Physics.; Department of Bioengineering.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Jun 09; Vol. 37 (9), pp. 1327-1329.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Authors: Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Brazilian Biorenewables National Laboratory-LNBR, Brazilian Center for Research in Energy and Materials-CNPEM, Campinas, SP 13083-100, Brazil.; Department of Physics, São Paulo State University (UNESP), Institute of Biosciences, Humanities and Exact Sciences, São José do Rio Preto, SP 15054-000, Brazil., Cheng RR; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA., Hajitaheri A; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Computer Science, University of Houston, Houston, TX 77204, USA., Dodero-Rojas E; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Theoretical and Computational Physics Laboratory, University of Costa Rica, San José 5 11501, Costa Rica., Mello MF; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Chemical Engineering Department, Military Institute of Engineering, Rio de Janeiro, RJ 22290-270, Brazil., Lieberman-Aiden E; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Wolynes PG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics & Astronomy, Rice University, Houston, TX 77005, USA.; Department of Chemistry, Rice University, Houston, TX 77005, USA.; Department of Biosciences, Rice University, Houston, TX 77005, USA., Di Pierro M; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics, Northeastern University, Boston, MA 02115, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics & Astronomy, Rice University, Houston, TX 77005, USA.; Department of Chemistry, Rice University, Houston, TX 77005, USA.; Department of Biosciences, Rice University, Houston, TX 77005, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D172-D182.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Prajapati JD; Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM 87545, United States., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, United States; Departments of Physics and Astronomy, Chemistry, and Biosciences, Rice University, Houston, TX 77005, United States., Sanbonmatsu KY; Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM 87545, United States; New Mexico Consortium, Los Alamos, NM 87544, United States. Electronic address: kys@lanl.gov.

Source: Journal of molecular biology [J Mol Biol] 2022 Sep 30; Vol. 434 (18), pp. 167788. Date of Electronic Publication: 2022 Aug 11.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

MeSH Terms: Nucleic Acid Conformation* , Riboswitch*, Molecular Dynamics Simulation ; Scattering, Small Angle ; Thermodynamics ; X-Ray Diffraction

Authors: Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. Electronic address: https://twitter.com/Vini_Contessoto., Cheng RR; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA. Electronic address: https://twitter.com/ryanrcheng., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA; Department of Physics and Astronomy, Rice University, Houston, TX, USA; Department of Chemistry, Rice University, Houston, TX, USA; Department of Biosciences, Rice University, Houston, TX, USA. Electronic address: jonuchic@rice.edu.

Source: Current opinion in structural biology [Curr Opin Struct Biol] 2022 Aug; Vol. 75, pp. 102418. Date of Electronic Publication: 2022 Jul 12.

Publication Type: Journal Article; Review; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Elsevier Science Country of Publication: England NLM ID: 9107784 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-033X (Electronic) Linking ISSN: 0959440X NLM ISO Abbreviation: Curr Opin Struct Biol Subsets: MEDLINE

MeSH Terms: Chromatin* , Chromosomes*, DNA ; Physics ; Polymers

Authors: Freitas FC; Laboratório de Biofísica Teórica, Departamento de Física, Instituto de Ciências Exatas, Naturais e Educação, Universidade Federal do Triângulo Mineiro, Uberaba, MG 38064-200, Brazil., Maldonado M; Departamento de Matemática, Instituto de Ciências Exatas, Naturais e Educação, Universidade Federal do Triângulo Mineiro, Uberaba, MG 38064-200, Brazil., Oliveira Junior AB; Center for Theoretical Biological Physics, Rice University, BioScience Research Collaborative, 6566 Main St., Houston, Texas 77030, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, BioScience Research Collaborative, 6566 Main St., Houston, Texas 77030, USA., Oliveira RJ; Laboratório de Biofísica Teórica, Departamento de Física, Instituto de Ciências Exatas, Naturais e Educação, Universidade Federal do Triângulo Mineiro, Uberaba, MG 38064-200, Brazil.

Source: The Journal of chemical physics [J Chem Phys] 2022 Jul 28; Vol. 157 (4), pp. 049901.

Publication Type: Journal Article; Published Erratum

Journal Info: Publisher: American Institute of Physics Country of Publication: United States NLM ID: 0375360 Publication Model: Print Cited Medium: Internet ISSN: 1089-7690 (Electronic) Linking ISSN: 00219606 NLM ISO Abbreviation: J Chem Phys Subsets: PubMed not MEDLINE; MEDLINE

Authors: Magi Meconi G; Computational Biophysics Lab, Center for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramon 182, 20014, Donostia-San Sebastián, Spain., Sasselli IR; Computational Biophysics Lab, Center for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramon 182, 20014, Donostia-San Sebastián, Spain., Bianco V; Onena Medicines, San Sebastian, Spain., Onuchic JN; Center for Theoretical Biological Physics, Department of Physics & Astronomy, Department of Chemistry, Department of Biosciences, Rice University, Houston, TX 77251, United States of America., Coluzza I; BCMaterials, Basque Center for Materials, Applications and Nanostructures, Bld. Martina Casiano, UPV/EHU Science Park, Barrio Sarriena s/n, 48940 Leioa, Spain.; Basque Foundation for Science, Ikerbasque, 48009, Bilbao, Spain.

Source: Reports on progress in physics. Physical Society (Great Britain) [Rep Prog Phys] 2022 Jul 06; Vol. 85 (8). Date of Electronic Publication: 2022 Jul 06.

Publication Type: Journal Article; Review; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Institute Of Physics Country of Publication: England NLM ID: 19620690R Publication Model: Electronic Cited Medium: Internet ISSN: 1361-6633 (Electronic) Linking ISSN: 00344885 NLM ISO Abbreviation: Rep Prog Phys Subsets: MEDLINE

MeSH Terms: Protein Folding* , Proteins*/chemistry, Kinetics ; Sequence Analysis, Protein

Authors: Ng Chau K; Physics Department, Northeastern University, Boston, Massachusetts 02115, USA., George JT; Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, USA., Onuchic JN; Center for Theoretical Biological Physics and Departments of Physics and Astronomy, Chemistry and Biosciences, Rice University, Houston, Texas 77005, USA., Lin X; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA., Levine H; Center for Theoretical Biological Physics and Departments of Physics and Bioengineering, Northeastern University, Boston, Massachusetts 02115, USA.

Source: Physical review. E [Phys Rev E] 2022 Jul; Vol. 106 (1-1), pp. 014406.

Publication Type: Journal Article

Journal Info: Publisher: American Physical Society Country of Publication: United States NLM ID: 101676019 Publication Model: Print Cited Medium: Internet ISSN: 2470-0053 (Electronic) Linking ISSN: 24700045 NLM ISO Abbreviation: Phys Rev E Subsets: PubMed not MEDLINE; MEDLINE

Authors: Guo WH; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA., Qi X; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA., Yu X; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA., Liu Y; Division of Cancer Medicine, Department of Lymphoma/Myeloma, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA., Chung CI; Department of Pharmaceutical Chemistry, University of California-San Francisco, San Francisco, CA, 94158, USA., Bai F; Center for Theoretical Biological Physics, Rice University, Houston, TX, 77005, USA., Lin X; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Lu D; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA., Wang L; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA., Chen J; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA., Su LH; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA., Nomie KJ; Division of Cancer Medicine, Department of Lymphoma/Myeloma, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA., Li F; Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX, 77030, USA.; Center for Drug Discovery, Baylor College of Medicine, Houston, TX, 77030, USA., Wang MC; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.; Huffington Center on Aging, Baylor College of Medicine, Houston, TX, 77030, USA.; Howard Hughes Medical Institute, Baylor College of Medicine, Houston, TX, 77030, USA., Shu X; Department of Pharmaceutical Chemistry, University of California-San Francisco, San Francisco, CA, 94158, USA., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX, 77005, USA., Woyach JA; Division of Hematology, Department of Internal Medicine, The Ohio State University, Columbus, OH, 43210, USA., Wang ML; Division of Cancer Medicine, Department of Lymphoma/Myeloma, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA., Wang J; Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX, 77030, USA. wangj@bcm.edu.; Center for Drug Discovery, Baylor College of Medicine, Houston, TX, 77030, USA. wangj@bcm.edu.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA. wangj@bcm.edu.

Source: Nature communications [Nat Commun] 2020 Aug 26; Vol. 11 (1), pp. 4268. Date of Electronic Publication: 2020 Aug 26.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE