Authors: Bohdan DR; Department of Innovation and High Technology, Moscow Institute of Physics and Technology, Dolgoprudny 141701, Russia., Voronina VV; Department of Information Systems, Ulyanovsk State Technical University, Ulyanovsk 432027, Russia., Bujnicki JM; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw 02-109, Poland., Baulin EF; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw 02-109, Poland.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Sep 08; Vol. 51 (16), pp. 8367-8382.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Kolberg T; Institute for Biochemistry, Leipzig University, Brüderstr. 34, 04103 Leipzig, Germany., von Löhneysen S; Bioinformatics Group, Department of Computer Science and Interdisciplinary Center for Bioinformatics, Leipzig University, Härtelstr. 16-18, 04107 Leipzig, Germany., Ozerova I; Bioinformatics Group, Department of Computer Science and Interdisciplinary Center for Bioinformatics, Leipzig University, Härtelstr. 16-18, 04107 Leipzig, Germany., Wellner K; Institute for Biochemistry, Leipzig University, Brüderstr. 34, 04103 Leipzig, Germany., Hartmann RK; Institute for Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6, 35037 Marburg, Germany., Stadler PF; Bioinformatics Group, Department of Computer Science and Interdisciplinary Center for Bioinformatics, Leipzig University, Härtelstr. 16-18, 04107 Leipzig, Germany.; Max Planck Institute for Mathematics in the Sciences, Inselstraße 22, D-04103 Leipzig, Germany.; Department of Theoretical Chemistry, University of Vienna, Währingerstraße 17, A-1090 Wien, Austria.; Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia.; Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM 87501, USA., Mörl M; Institute for Biochemistry, Leipzig University, Brüderstr. 34, 04103 Leipzig, Germany.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Jun 23; Vol. 51 (11), pp. e63.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Ghosh S; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan., Takahashi S; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan., Banerjee D; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan., Ohyama T; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan., Endoh T; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan., Tateishi-Karimata H; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan., Sugimoto N; Frontier Institute for Biomolecular Engineering Research (FIBER), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan.; Graduate School of Frontiers of Innovative Research in Science and Technology (FIRST), Konan University, 7-1-20 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan.

Source: Nucleic acids research [Nucleic Acids Res] 2023 May 22; Vol. 51 (9), pp. 4101-4111.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Herbert A; Discovery Division, InsideOutBio, Charlestown, Massachusetts, USA. Electronic address: alan.herbert@insideoutbio.com.

Source: The Journal of biological chemistry [J Biol Chem] 2023 Sep; Vol. 299 (9), pp. 105140. Date of Electronic Publication: 2023 Aug 05.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Review

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1083-351X (Electronic) Linking ISSN: 00219258 NLM ISO Abbreviation: J Biol Chem Subsets: MEDLINE

MeSH Terms: DNA*/chemistry , DNA*/genetics , DNA*/metabolism , Nucleic Acid Conformation* , Promoter Regions, Genetic*/genetics , RNA*/genetics , Transcription, Genetic*, Animals ; DNA, Single-Stranded/chemistry ; DNA, Single-Stranded/genetics ; DNA, Single-Stranded/metabolism ; DNA, Z-Form/chemistry ; DNA, Z-Form/genetics ; DNA, Z-Form/metabolism ; Epigenesis, Genetic ; Genome/genetics ; Histones/metabolism ; Nucleosomes/chemistry ; Nucleosomes/metabolism

Authors: Xiang Y; Department of Biology, Duke University, Durham, NC, USA.; Howard Hughes Medical Institute, Duke University, Durham, NC, USA., Huang W; MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing, China.; Beijing Frontier Research Center for Biological Structures, Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing, China.; Tsinghua-Peking Center for Life Sciences, Beijing, China., Tan L; Department of Pharmacology and Cancer Biology, Duke Medical Center, Duke University, Durham, NC, USA., Chen T; Department of Biology, Duke University, Durham, NC, USA.; Howard Hughes Medical Institute, Duke University, Durham, NC, USA., He Y; Department of Biology, Duke University, Durham, NC, USA.; Howard Hughes Medical Institute, Duke University, Durham, NC, USA., Irving PS; Department of Chemistry, University of North Carolina, Chapel Hill, NC, USA., Weeks KM; Department of Chemistry, University of North Carolina, Chapel Hill, NC, USA., Zhang QC; MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing, China.; Beijing Frontier Research Center for Biological Structures, Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing, China.; Tsinghua-Peking Center for Life Sciences, Beijing, China., Dong X; Department of Biology, Duke University, Durham, NC, USA. xdong@duke.edu.; Howard Hughes Medical Institute, Duke University, Durham, NC, USA. xdong@duke.edu.

Source: Nature [Nature] 2023 Sep; Vol. 621 (7978), pp. 423-430. Date of Electronic Publication: 2023 Sep 06.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

MeSH Terms: Codon, Initiator*/genetics , RNA, Double-Stranded*/chemistry , RNA, Double-Stranded*/genetics , RNA, Double-Stranded*/metabolism , RNA, Messenger*/genetics , Nucleic Acid Conformation*, Humans ; Arabidopsis/genetics ; Arabidopsis/immunology ; Innate Immunity Recognition ; Open Reading Frames/genetics ; Protein Biosynthesis/genetics ; Protein Biosynthesis/immunology ; Ribosomes/metabolism ; Transcriptome ; DEAD-box RNA Helicases/chemistry ; DEAD-box RNA Helicases/genetics ; DEAD-box RNA Helicases/metabolism ; Deep Learning

Authors: Yang Q; Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA., Chang X; Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA., Lee JY; Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA., Saji M; Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA., Zhang F; Department of Chemistry, Rutgers University, Newark, NJ, 07102, USA. fei.zhang@rutgers.edu.

Source: Nature communications [Nat Commun] 2023 Nov 23; Vol. 14 (1), pp. 7675. Date of Electronic Publication: 2023 Nov 23.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Authors: Niu X; Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, Beijing, 100084, China., Xu Z; Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, Beijing, 100084, China., Zhang Y; Key Laboratory of RNA Science and Engineering, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China., Zuo X; X-ray Science Division, Argonne National Laboratory, Lemont, IL, 60439, USA., Chen C; Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, Beijing, 100084, China. chunlai@mail.tsinghua.edu.cn.; State Key Laboratory of Membrane Biology, Tsinghua University, Beijing, 100084, China. chunlai@mail.tsinghua.edu.cn., Fang X; Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, Beijing, 100084, China. fangxy@ibp.ac.cn.; Key Laboratory of RNA Science and Engineering, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China. fangxy@ibp.ac.cn.

Source: Nature communications [Nat Commun] 2023 Nov 15; Vol. 14 (1), pp. 7394. Date of Electronic Publication: 2023 Nov 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Authors: Hou Q; Single Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.; Tri-Institutional PhD Program in Chemical Biology, Weill Cornell Medicine, The Rockefeller University, Memorial Sloan Kettering Cancer Center, NY, NY 10021, USA., Chatterjee S; Single Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.; Department of Physics, Case Western Reserve University, Cleveland, Ohio 44106, USA., Lund PE; Single Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA., Suddala KC; Single Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA., Walter NG; Single Molecule Analysis Group, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 11345-11357.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Sieg JP; Department of Chemistry, Pennsylvania State University, University Park, PA 16802, USA.; Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA., Jolley EA; Department of Chemistry, Pennsylvania State University, University Park, PA 16802, USA.; Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA., Huot MJ; Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA., Babitzke P; Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA., Bevilacqua PC; Department of Chemistry, Pennsylvania State University, University Park, PA 16802, USA.; Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 11298-11317.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Gusti Ngurah Putu EP; CMBC, CNRS UMR9187, INSERM U1196, Institut Curie, PSL Research University, 91405 Orsay, France.; CMBC, CNRS UMR9187, INSERM U1196, Université Paris Saclay, 91405 Orsay, France., Cattiaux L; CMBC, CNRS UMR9187, INSERM U1196, Institut Curie, PSL Research University, 91405 Orsay, France.; CMBC, CNRS UMR9187, INSERM U1196, Université Paris Saclay, 91405 Orsay, France., Lavergne T; DCM, CNRS UMR5250, Université Grenoble Alpes, 38000 Grenoble, France., Pommier Y; Laboratory of Molecular Pharmacology & Developmental Therapeutics Branch, CCR-NCI, NIH, Bethesda, MD 20892, USA., Bombard S; CMBC, CNRS UMR9187, INSERM U1196, Institut Curie, PSL Research University, 91405 Orsay, France.; CMBC, CNRS UMR9187, INSERM U1196, Université Paris Saclay, 91405 Orsay, France., Granzhan A; CMBC, CNRS UMR9187, INSERM U1196, Institut Curie, PSL Research University, 91405 Orsay, France.; CMBC, CNRS UMR9187, INSERM U1196, Université Paris Saclay, 91405 Orsay, France.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 10846-10866.

Publication Type: Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Kosek DM; Department of Cell and Molecular Biology, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177Stockholm, Sweden., Banijamali E; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177Stockholm, Sweden., Becker W; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177Stockholm, Sweden., Petzold K; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177Stockholm, Sweden.; Department of Medical Biochemistry and Microbiology, Uppsala University, Biomedical Centre D9:3, Husargatan 3, 752 37 Uppsala, Sweden., Andersson ER; Department of Cell and Molecular Biology, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177Stockholm, Sweden.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 11162-11177.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: He W; Chemistry Program, Science Division, New York University, Abu Dhabi, United Arab Emirates.; Department of Chemistry, New York University, USA., San Emeterio J; School of Applied and Engineering Physics, Cornell University, USA., Woodside MT; Department of Physics, Li Ka Shing Institute of Virology, and Centre for Prions and Protein Folding Diseases, University of Alberta, Canada., Kirmizialtin S; Chemistry Program, Science Division, New York University, Abu Dhabi, United Arab Emirates.; Department of Chemistry, New York University, USA., Pollack L; School of Applied and Engineering Physics, Cornell University, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 11332-11344.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Kraus L; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.; Centre for Synthetic Biology, TU Darmstadt, 64287 Darmstadt, Germany., Duchardt-Ferner E; Institut für Molekulare Biowissenschaften und Zentrum für Biomolekulare Magnetische Resonanz (BMRZ), Goethe-Universität Frankfurt, Max-von-Laue Straße 9, 60438 Frankfurt, Germany., Bräuchle E; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany., Fürbacher S; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany., Kelvin D; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.; Centre for Synthetic Biology, TU Darmstadt, 64287 Darmstadt, Germany., Marx H; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.; Institute of Microbiology and Microbial Biotechnology BOKU University of Natural Resources and Life Sciences, Muthgasse 18, A-1190 Vienna, Austria., Boussebayle A; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.; Interdisciplinary Nanoscience Center (iNANO), Gustav Wieds Vej 14, Aarhus University, DK-8000 Aarhus, Denmark., Maurer LM; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.; Centre for Synthetic Biology, TU Darmstadt, 64287 Darmstadt, Germany.; Institut für Molekulare Biowissenschaften und Zentrum für Biomolekulare Magnetische Resonanz (BMRZ), Goethe-Universität Frankfurt, Max-von-Laue Straße 9, 60438 Frankfurt, Germany., Bofill-Bosch C; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany., Wöhnert J; Institut für Molekulare Biowissenschaften und Zentrum für Biomolekulare Magnetische Resonanz (BMRZ), Goethe-Universität Frankfurt, Max-von-Laue Straße 9, 60438 Frankfurt, Germany., Suess B; Fachbereich Biologie, TU Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.; Centre for Synthetic Biology, TU Darmstadt, 64287 Darmstadt, Germany.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 11375-11385.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Vögele J; Institute for Molecular Biosciences, Goethe-University Frankfurt, Max-von-Laue-Strasse 9, 60438 Frankfurt/M., Germany.; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Hymon D; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.; Institute for Organic Chemistry and Chemical Biology, Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Martins J; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.; Institute for Organic Chemistry and Chemical Biology, Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Ferner J; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.; Institute for Organic Chemistry and Chemical Biology, Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Jonker HRA; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.; Institute for Organic Chemistry and Chemical Biology, Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Hargrove AE; Department of Chemistry, Duke University, Durham, NC 27708, USA., Weigand JE; Philipps-University Marburg, Department of Pharmacy, Institute of Pharmaceutical Chemistry, Marbacher Weg 6, 35037 Marburg, Germany., Wacker A; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.; Institute for Organic Chemistry and Chemical Biology, Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Schwalbe H; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.; Institute for Organic Chemistry and Chemical Biology, Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Wöhnert J; Institute for Molecular Biosciences, Goethe-University Frankfurt, Max-von-Laue-Strasse 9, 60438 Frankfurt/M., Germany.; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Duchardt-Ferner E; Institute for Molecular Biosciences, Goethe-University Frankfurt, Max-von-Laue-Strasse 9, 60438 Frankfurt/M., Germany.; Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 10; Vol. 51 (20), pp. 11318-11331.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Wang W; School of Mathematical Sciences, Nankai University, Tianjin, 300071, China., Feng C; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China.; School of Science, Ningxia Medical University, Yinchuan, 750004, China., Han R; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China., Wang Z; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China., Ye L; School of Mathematical Sciences, Nankai University, Tianjin, 300071, China., Du Z; School of Mathematical Sciences, Nankai University, Tianjin, 300071, China., Wei H; School of Mathematical Sciences, Nankai University, Tianjin, 300071, China., Zhang F; School of Medical Technology, Beijing Institute of Technology, Beijing, 100081, China. zhangfa@ict.ac.cn., Peng Z; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China. zhenling@email.sdu.edu.cn., Yang J; MOE Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Sciences, Shandong University, Qingdao, 266237, China. yangjy@sdu.edu.cn.

Source: Nature communications [Nat Commun] 2023 Nov 09; Vol. 14 (1), pp. 7266. Date of Electronic Publication: 2023 Nov 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Authors: Binet T; Université de technologie de Compiègne, UPJV, CNRS, Enzyme and Cell Engineering, Centre de recherche Royallieu - CS 60 319, 60203, Compiègne Cedex, France., Padiolleau-Lefèvre S; Université de technologie de Compiègne, UPJV, CNRS, Enzyme and Cell Engineering, Centre de recherche Royallieu - CS 60 319, 60203, Compiègne Cedex, France., Octave S; Université de technologie de Compiègne, UPJV, CNRS, Enzyme and Cell Engineering, Centre de recherche Royallieu - CS 60 319, 60203, Compiègne Cedex, France., Avalle B; Université de technologie de Compiègne, UPJV, CNRS, Enzyme and Cell Engineering, Centre de recherche Royallieu - CS 60 319, 60203, Compiègne Cedex, France. berangere.avalle@utc.fr., Maffucci I; Université de technologie de Compiègne, UPJV, CNRS, Enzyme and Cell Engineering, Centre de recherche Royallieu - CS 60 319, 60203, Compiègne Cedex, France. irene.maffucci@utc.fr.

Source: BMC bioinformatics [BMC Bioinformatics] 2023 Nov 08; Vol. 24 (1), pp. 422. Date of Electronic Publication: 2023 Nov 08.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Authors: Moursy A; Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland.; Novartis Institutes for BioMedical Research, Basel, Switzerland., Cléry A; Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland. antoine.clery@bc.biol.ethz.ch., Gerhardy S; Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland.; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland.; Sardona Therapeutics, San Francisco, CA, USA., Betz KM; Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland., Rao S; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., Mazur J; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., Campagne S; Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland.; ARNA laboratory, INSERM U1212, University of Bordeaux, Bordeaux, France., Beusch I; Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland.; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA., Duszczyk MM; Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland., Robinson MD; Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland., Panse VG; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland. vpanse@imm.uzh.ch.; Faculty of Science, University of Zurich, Zurich, Switzerland. vpanse@imm.uzh.ch., Allain FH; Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland. allain@bc.biol.ethz.ch.

Source: Nature communications [Nat Commun] 2023 Nov 07; Vol. 14 (1), pp. 7166. Date of Electronic Publication: 2023 Nov 07.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Authors: Hori N; Department of Chemistry, University of Texas, Austin, TX 78712, USA.; School of Pharmacy, University of Nottingham, Nottingham, UK., Thirumalai D; Department of Chemistry, University of Texas, Austin, TX 78712, USA.; Department of Physics, University of Texas, Austin, TX 78712, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Oct 27; Vol. 51 (19), pp. 10737-10751.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Mikkelsen AA; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA., Gao F; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA., Carino E; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA., Bera S; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA., Simon AE; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Oct 27; Vol. 51 (19), pp. 10700-10718.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Authors: Zhang H; Baidu Research, Sunnyvale, CA, USA.; School of Electrical Engineering & Computer Science, Oregon State University, Corvallis, OR, USA., Li S; School of Electrical Engineering & Computer Science, Oregon State University, Corvallis, OR, USA., Dai N; School of Electrical Engineering & Computer Science, Oregon State University, Corvallis, OR, USA., Zhang L; School of Electrical Engineering & Computer Science, Oregon State University, Corvallis, OR, USA., Mathews DH; Department of Biochemistry & Biophysics,Rochester, NY 14642, USA.; Center for RNA Biology, Rochester, NY 14642, USA.; Department of Biostatistics & Computational Biology, University of Rochester Medical Center, Rochester, NY 14642, USA., Huang L; School of Electrical Engineering & Computer Science, Oregon State University, Corvallis, OR, USA.

Source: Nucleic acids research [Nucleic Acids Res] 2023 Oct 13; Vol. 51 (18), pp. e94.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE