Search Results - "MESH: Haplotypes"

1

Functional consequences of archaic introgression and their impact on fitness

Authors: Maxime Rotival, Lluis Quintana-Murci

Contributors: Génétique Evolutive Humaine - Human Evolutionary Genetics, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Chaire Génomique humaine et évolution, Collège de France (CdF (institution)), The laboratory of L.Q.-M. is supported by the Institut Pasteur, the Collège de France, the French Government’s Investissement d’Avenir program, Laboratoires d’Excellence 'Integrative Biology of Emerging Infectious Diseases' (ANR-10- LABX-62-IBEID) and 'Milieu Intérieur' (ANR-10-LABX-69-01), and the Fondation pour la Recherche Médicale (Equipe FRM DEQ20180339214)., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), ANR-10-LABX-0069,MILIEU INTERIEUR,GENETIC & ENVIRONMENTAL CONTROL OF IMMUNE PHENOTYPE VARIANCE: ESTABLISHING A PATH TOWARDS PERSONALIZED MEDICINE(2010)

Source: Genome Biology, Vol 21, Iss 1, Pp 1-4 (2020)
Genome Biology
Genome Biology, BioMed Central, 2020, 21 (1), pp.3. ⟨10.1186/s13059-019-1920-z⟩
Genome Biology, 2020, 21 (1), pp.3. ⟨10.1186/s13059-019-1920-z⟩

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https://doaj.org/article/6f28d8ac8bca49f5be78b13ea5215ea4

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2

Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome

Authors: Bhoom Suktitipat, Prapat Suriyaphol, Nattaya Tangthawornchaikul, Worachart Lert-itthiporn, Harald Grove, Fumihiko Matsuda, Prida Malasit, Anavaj Sakuntabhai

Contributors: Mahidol University [Bangkok], Génétique fonctionnelle des Maladies infectieuses - Functional Genetics of Infectious Diseases, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Kyoto University [Kyoto], This research was supported by National Research Council of Thailand (NRCT) (grant number 92/2550). Additionally, the research was partial funded by the Office of the Higher Education Commission and Mahidol University under the National Research Universities Initiative. W. Lert-itthiporn was supported by a scholarship from the Medical Scholars Program, Mahidol University. P. Malasit was supported by NSTDA Chair Professor Grant. P. Suriyaphol was supported by a National Research University (NRU) Grant through Mahidol University and TRF-office for R&D., Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]

Source: BMC Medical Genetics, Vol 19, Iss 1, Pp 1-10 (2018)
BMC Medical Genetics
BMC Medical Genetics, BioMed Central, 2018, 19 (1), pp.23. ⟨10.1186/s12881-018-0534-8⟩

Subject Terms: Imputation, Reference, Genotype, Pan-Asian SNP, SNP annotation, lcsh:Internal medicine, lcsh:RC31-1245, lcsh:Genetics, lcsh:QH426-470, MESH: Adolescent, MESH: Asian Continental Ancestry Group, MESH: Humans, MESH: Infant, MESH: Linkage Disequilibrium, MESH: Molecular Sequence Annotation, MESH: Polymorphism, Single Nucleotide, MESH: Reproducibility of Results, MESH: Child, MESH: Child, Preschool, MESH: Gene Frequency, MESH: Genetic Association Studies, MESH: Genetics, Population, MESH: Genome, Human, MESH: Genotype, MESH: Haplotypes, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, [SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology, [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie, Genetics (clinical), Genetics, Single-nucleotide polymorphism, Statistics, dbSNP, Genetic association, International HapMap Project, Imputation (genetics), Biology, Southeast asian, 1000 Genomes Project, Research Article

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http://link.springer.com/article/10.1186/s12881-018-0534-8

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3

Cynomolgus macaque IL37 polymorphism and control of SIV infection

Authors: Nicolas Congy-Jolivet, Henri-Jean Garchon, Alice Aarnink, Olivier Lambotte, Nicolas Tchitchek, Delphine Desjardins, Antoine Blancher, Ioannis Theodorou, Bruno Vaslin, Takashi Shiina, Brigitte Autran, Shingo Suzuki, Roger Le Grand, Nathalie Dereuddre-Bosquet

Contributors: Tokai University, Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées, Institut Fédératif de Biologie (IFB) - Hôpital Purpan, Hôpital Purpan [Toulouse], CHU Toulouse [Toulouse]-CHU Toulouse [Toulouse], Centre d'investigation clinique de Toulouse (CIC 1436), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-CHU Toulouse [Toulouse]-Institut National de la Santé et de la Recherche Médicale (INSERM), Infection et inflammation (2I), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut National de la Santé et de la Recherche Médicale (INSERM), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Université de Versailles Saint-Quentin-en-Yvelines - UFR Sciences de la santé Simone Veil (UVSQ Santé), Hôpital Ambroise Paré [AP-HP], Immunologie des Maladies Virales et Autoimmunes (IMVA - U1184), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Infectious Diseases Models for Innovative Therapies (IDMIT), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Centre d'Immunologie et de Maladies Infectieuses (CIMI), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Service d'Immunologie [CHU Pitié-Salpétrière], CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU), Sorbonne Université (SU), AP-HP Hôpital Bicêtre (Le Kremlin-Bicêtre), Institut des Maladies Emergentes et des Thérapies Innovantes (IMETI), Centre de Physiopathologie Toulouse Purpan (CPTP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Immunogénétique Moléculaire (LIMT), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, CHU Toulouse [Toulouse], Centre d'Immunologie et des Maladies Infectieuses (CIMI), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), ANR-11-INBS-0008,IDMIT,Infrastructure nationale pour la modélisation des maladies infectieuses humaines(2011), ANR-10-EQPX-0002,FlowCyTech,Plateforme de phénotypage en Mass cytométrie pour l'analyse multiparamétrique de biomarqueurs complexes de l'efficacité de nouvelles stratégies thérapeutiques ou vaccinales(2010), Tokai University, Japan, Ingénierie Moléculaire et Physiopathologie Articulaire (IMoPA), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Department of Neurology, André Mignot Hospital, University of Versailles, St-Quentin-en-Yvelines, Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Université Pierre et Marie Curie - Paris 6 (UPMC)

Source: Scientific Reports
Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.7981. ⟨10.1038/s41598-019-44235-x⟩
Scientific Reports, 2019, 9 (1), pp.7981. ⟨10.1038/s41598-019-44235-x⟩
Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-019-44235-x⟩
Scientific Reports, Vol 9, Iss 1, Pp 1-15 (2019)

Subject Terms: [SDV]Life Sciences [q-bio], [SDV.IMM]Life Sciences [q-bio]/Immunology, MESH: Animals, MESH: Base Sequence, MESH: Genetic Loci, MESH: Haplotypes, MESH: High-Throughput Nucleotide Sequencing, MESH: Histocompatibility Antigens Class I / genetics, MESH: Histocompatibility Antigens Class I / immunology, MESH: Host-Pathogen Interactions / genetics, MESH: Host-Pathogen Interactions / immunology, MESH: Interferon-Stimulated Gene Factor 3, gamma Subunit / genetics, MESH: Interferon-Stimulated Gene Factor 3, gamma Subunit / immunology, MESH: Interleukin-1 / genetics, MESH: Interleukin-1 / immunology, MESH: Linear Models, MESH: Exons, MESH: Gene Expression, Multidisciplinary, Gene expression, Biology, Exon, Candidate gene, Virology, Single-nucleotide polymorphism, Haplotype, Odds ratio, Polymorphism (computer science), Gene, [SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics, [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, ComputingMilieux_MISCELLANEOUS, Article, Immunogenetics, HIV infections, lcsh:Medicine, lcsh:R, lcsh:Science, lcsh:Q

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f10cd764ad05ff00d00a2e63ad53fe4
https://hal.sorbonne-universite.fr/hal-02149363

4

Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao People’s Democratic Republic

Authors: Paul T. Brey, Elliott F. Miot, Phoutmany Thammavong, Bruna Demari-Silva, Jeffrey C. Hertz, Somsanith Chonephetsarath, Pattamaporn Kittayapong, Sébastien Marcombe, Nothasine Phommavanh, Dina M. Fonseca, Maysa T Motoki

Contributors: Institut Pasteur du Laos, Réseau International des Instituts Pasteur (RIIP), Vysnova Partners, Inc. [Landover, MD], Smithsonian Institution, Rutgers, The State University of New Jersey [New Brunswick] (RU), Rutgers University System (Rutgers), Cellule Pasteur UPMC, Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut Pasteur [Paris], Interactions Virus-Insectes - Insect-Virus Interactions (IVI), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Universidade de São Paulo = University of São Paulo (USP), Naval Medical Research Unit Two [Singapore] (NAMRU-2), Naval Medical Research, Mahidol University [Bangkok], The views expressed in this publication are those of the author and do not necessarily reflect the official policy or position of the Department of the Navy, Department of Defense, nor the U.S. Government. This study was partially supported by the U.S. Naval Medical Research Unit TWO, work unit number D1428, in support of the Military Infectious Diseases Research Program and Institut Pasteur du Laos. I (JCH) am a military service member. This work was prepared as part of my official duties. Title 17, U.S.C., §105 provides that copyright protection under this title is not available for any work of the U.S. Government. Title 17, U.S.C., §101 defines a U.S. Government work as a work prepared by a military service member or employee of the U.S. Government as part of that person’s official duties., Universidade de São Paulo (USP)

Source: Parasites & Vectors
Parasites & Vectors, 2019, 12 (1), pp.477. ⟨10.1186/s13071-019-3740-0⟩
Parasites & Vectors, Vol 12, Iss 1, Pp 1-12 (2019)

Subject Terms: Research, Aedes albopictus, cox1 gene, Genetic population, Lao PDR, fungi, viruses, Infectious Diseases, Parasitology, biology.organism_classification, biology, Gene flow, Genetic variability, Genetic structure, Ecology, Isolation by distance, Population, education.field_of_study, education, Aedes, Population genetics, MESH: Aedes, MESH: Algorithms, MESH: DNA, MESH: Electron Transport Complex IV, MESH: Genetic Variation, MESH: Far East, MESH: Female, MESH: Genetics, Population, MESH: Haplotypes, MESH: Italy, MESH: Laos, MESH: Mitochondria, MESH: Phylogeny, MESH: Mosquito Control, MESH: Mosquito Vectors, MESH: Sequence Analysis, DNA, MESH: Animals, MESH: Tropical Climate, MESH: United States, MESH: Asia, Southeastern, MESH: Bayes Theorem, MESH: Cluster Analysis, [SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology, lcsh:Infectious and parasitic diseases, lcsh:RC109-216

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72c35781ec5d2a4d1b531e52bf5aac82
http://europepmc.org/articles/PMC6792217

5

Whole genome sequencing of amplified Plasmodium knowlesi DNA from unprocessed blood reveals genetic exchange events between Malaysian Peninsular and Borneo subpopulations

Contributors: Université de Montpellier (UM), Centre National de la Recherche Scientifique (CNRS), London School of Hygiene and Tropical Medicine (LSHTM)

Source: Scientific Reports, Vol 9, Iss 1, Pp 1-11 (2019)
Scientific Reports
Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.9873. ⟨10.1038/s41598-019-46398-z⟩

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https://doi.org/10.1038/s41598-019-46398-z

6

A genome wide SNP genotyping study in the Tunisian population: specific reporting on a subset of common breast cancer risk loci

Authors: Sonia Abdelhak, Olfa Messaoud, Mohamed Samir Boubaker, Mariem Ben Rekaya, Yosr Hamdi, Ridha Mrad, Shan Jingxuan, Lilia Romdhane, Hamouda Boussen, Amel Benammar Elgaaied, Lotfi Chouchane, Majdi Nagara

Contributors: Laboratoire de Génomique Biomédicale et Oncogénétique - Biomedical Genomics and Oncogenetics Laboratory (LR11IPT05), Université de Tunis El Manar (UTM)-Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Weill Cornell Medicine [Qatar], Faculté des Sciences Mathématiques, Physiques et Naturelles de Tunis (FST), Université de Tunis El Manar (UTM), Hôpital Charles Nicolle [Tunis], Hôpital Abderrahmen Mami, Faculté des Sciences de Bizerte [Université de Carthage], Université de Carthage - University of Carthage, This work was supported by the 'Qatar National Research Foundation' (NPRP 08–083–3-031) that contributed to the design of the study, collection, analysis, interpretation of data and in writing the manuscript., The authors would like to thank all the individuals who took part in this study and all the researchers, clinicians, technicians and administrative staff who have enabled this work to be carried out.

Source: BMC Cancer
BMC Cancer, BioMed Central, 2018, 18 (1), pp.1295. ⟨10.1186/s12885-018-5133-8⟩
BMC Cancer, Vol 18, Iss 1, Pp 1-14 (2018)

Subject Terms: Haplotype analysis, Breast cancer susceptibility, Population genetics, Functional analysis, MESH: Adult, MESH: African Continental Ancestry Group/genetics, MESH: Computer Simulation, MESH: Female, MESH: Gene Frequency/genetics, MESH: Genetic Loci/genetics, MESH: Genetic Predisposition to Disease, MESH: Genome-Wide Association Study, MESH: Haplotypes/genetics, MESH: Healthy Volunteers, MESH: Humans, MESH: Linkage Disequilibrium/genetics, MESH: Male, MESH: Middle Aged, MESH: Polymorphism, Single Nucleotide, MESH: Tunisia, MESH: Breast Neoplasms/genetics, [SDV.CAN]Life Sciences [q-bio]/Cancer, [SDV.MHEP]Life Sciences [q-bio]/Human health and pathology, Research Article, lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens, lcsh:RC254-282, Cancer Research, Genetics, Oncology, Allele frequency, International HapMap Project, Biology, Linkage disequilibrium, SNP genotyping, Haplotype, Genetic association, Expression quantitative trait loci, Breast cancer, medicine.disease, medicine

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::495d666473b7664a26bd052edc038b59
https://hal-riip.archives-ouvertes.fr/pasteur-01984744

7

The benefits of analysing complete mitochondrial genomes: Deep insights into the phylogeny and population structure of Echinococcus granulosus sensu lato genotypes G6 and G7

Contributors: Institute of Ecology and Earth Sciences [Tartu], University of Tartu, University of Hohenheim, Sudan International University, World Health Organization Collaborating Centre for the Epidemiology, Detection and Control of Cystic and Alveolar Echinococcosis, Laboratoire de la rage et de la faune sauvage de Nancy (LRFSN), Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), University of Melbourne, Golestan University of Medical Sciences, Isfahan University of Medical Sciences, Isfahan University of Medical Sciences [Iran] (MUI), Universidad Complutense de Madrid = Complutense University of Madrid [Madrid] (UCM), Universidad Nacional del Comahue [Neuquén] (UNCOMA), Università degli Studi di Sassari = University of Sassari [Sassari] (UNISS), Shahid Beheshti University of Medical Sciences [Tehran] (SBUMS), Laboratorio de Zoonosis Parasitarias (FCEyN, UNMdP), Dr. Manuel Gea González General Hospital, Instituto de Salud Carlos III [Madrid] (ISC), Medical University of Warsaw - Poland, Polish Academy of Sciences (PAN), Lithuanian University of Health Sciences [Kaunas, Lithuania], Slovak Academy of Sciences (SAS), I.I. Schmalhausen Institute of Zoology of NASU, National Academy of Sciences of Ukraine (NASU), Institutional research funding from the Estonian Ministry of Education and Research (IUT20-32), The Estonian Doctoral School of Ecology and Environmental Sciences, European Project: 602051,EC:FP7:HEALTH,FP7-HEALTH-2013-INNOVATION-1,HERACLES(2013), Comahue National University, Università degli Studi di Sassari [Sassari] (UNISS), Shahid Beheshti University

Source: Infection, Genetics and Evolution
Infection, Genetics and Evolution, Elsevier, 2018, 64, pp.85-94. ⟨10.1016/j.meegid.2018.06.016⟩

Subject Terms: Cystic echinococcosis, Genotype G6, Genotype G7, Hydatid disease, Mitochondrial genome, Zoonosis, MESH: Echinococcus granulosus, MESH: Genome, Mitochondrial, MESH: Genomics, MESH: Genotype, MESH: Phylogeny, MESH: Bayes Theorem, MESH: Haplotypes, [SDV]Life Sciences [q-bio], [SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology, [SDV.BA.MVSA]Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal Health, Infectious Diseases, Microbiology (medical), Genetics, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Microbiology, Genetic variation, Haplotype, Biology, Evolutionary biology, Population, education.field_of_study, education, Echinococcus granulosus, biology.organism_classification, Genetic structure, Haplogroup, Genetic diversity, Genetic variability

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d7a759c9b16009942bc63f382f6bcc53
https://hal-anses.archives-ouvertes.fr/anses-03419409

8

A Founder Effect of c.257 + 2T > C Mutation in NCF2 Gene Underlies Severe Chronic Granulomatous Disease in Eleven Patients

Authors: Zohra Fitouri, Samir Boukthir, Karen Rouault, Sihem Barsaoui, Khaoula Ben-Farhat, Imen Ben-Mustapha, Selim Abdelmoula, Beya Larguèche, Saber Hamami, M. R. Barbouche, Meriem Ben-Ali, Jalel Chemli, Monia Khemiri, Amel Ben-Chehida, Mohamed-Neji Guediche, Najla Mekki

Contributors: Université de Tunis El Manar (UTM), Laboratoire de Transmission, Contrôle et Immunobiologie des Infections - Laboratory of Transmission, Control and Immunobiology of Infection (LR11IPT02), Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Faculté de Médecine de Tunis, Génétique, génomique fonctionnelle et biotechnologies (UMR 1078) (GGB), Institut Brestois Santé Agro Matière (IBSAM), Université de Brest (UBO)-Université de Brest (UBO)-EFS-Institut National de la Santé et de la Recherche Médicale (INSERM), Département pédiatrique [Hôpital Fattouma Bourguiba - Monastir], CHU Fattouma Bourguiba [Monastir] (HFB), Department of Pediatrics [Tunis], Hôpital La Rabta [Tunis], Béchir Hamza Children's Hospital, Hôpital Universitaire Sahloul (CHU Sahloul), Pasteur Tunis, Institut

Source: Journal of Clinical Immunology
Journal of Clinical Immunology, Springer Verlag, 2016, 36 (6), pp.547-554. ⟨10.1007/s10875-016-0299-9⟩

Subject Terms: Immunology, Immunology and Allergy, Gene, Allele, Haplotype, Consanguinity, Chronic granulomatous disease, medicine.disease, medicine, Genetic marker, Biology, Genetics, Founder effect, Mutation, medicine.disease_cause, consanguinity, founder effect, Tunisia, NCF2 gene, MESH: Alleles, MESH: Child, MESH: NADPH Oxidases/genetics, MESH: NADPH Oxidases/metabolism, MESH: Child, Preschool, MESH: Neutrophils/immunology, MESH: Neutrophils/metabolism, MESH: Phenotype, MESH: Severity of Illness Index, MESH: Tunisia, MESH: Consanguinity, MESH: DNA Mutational Analysis, MESH: Granulomatous Disease, Chronic/diagnosis, MESH: Enzyme Activation, MESH: Female, MESH: Founder Effect, MESH: Genetic Association Studies, MESH: Genetic Predisposition to Disease, MESH: Granulomatous Disease, Chronic/genetics, MESH: Granulomatous Disease, Chronic/metabolism, MESH: Haplotypes, MESH: Humans, MESH: Infant, MESH: Male, MESH: Mutation, [SDV]Life Sciences [q-bio], [SDV] Life Sciences [q-bio]

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d93add6bc9843dc959ccce1265808deb
https://doi.org/10.1007/s10875-016-0299-9

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9

The fully synthetic MAG-Tn3 therapeutic vaccine containing the tetanus toxoid-derived TT830-844 universal epitope provides anti-tumor immunity

Authors: Claude Leclerc, Richard Lo-Man, Sebastian Amigorena, Edith Dériaud, Cecile Artaud, Christine Sedlik, Christelle Ganneau, Daphné Laubreton, Sylvie Bay, Sophie Viel, Catherine Gérard, Anne-Laure Puaux

Contributors: Régulation Immunitaire et Vaccinologie, Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Pasteur [Paris], Chimie des biomolécules, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Immunité et cancer (U932), Université Paris Descartes - Paris 5 (UPD5)-Institut Curie [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM), Pôle Intégré de Recherche Clinique (PIRC), Institut Pasteur [Paris], GSK Vaccines - Belgium, Laboratoire de Mathématiques d'Orsay (LM-Orsay), Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11), The work was funded by the Ligue Nationale Contre le Cancer (Equipe Labellisée 2014), the Banque Privée Européenne, the European Union’s Seventh Framework Programme under Grant Agreement No: 280873 ADITEC and the donors of the MAG-Tn3 program. The authors thank the PIRC (Pôle Integré de Recherche Clinique, Institut Pasteur, Paris, France) for their help in the organization of experiments on cynomolgus monkeys. The authors thank Nancy Dezutter, Valentine Wascotte and David Bouffard for developing the MAG-Tn3 formulation and for discussions, European Project: 280873,EC:FP7:HEALTH,FP7-HEALTH-2011-single-stage,ADITEC(2011), Institut Pasteur [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS)

Source: Cancer Immunology, Immunotherapy
Cancer Immunology, Immunotherapy, Springer Verlag, 2016, 65 (3), pp.315-25. ⟨10.1007/s00262-016-1802-0⟩

Subject Terms: Original Article, Universal epitope, TT830-844, MAG-Tn3, Antibody response, Anticancer vaccine, Immunology, Immunology and Allergy, Cancer Research, Oncology, Toxoid, Epitope, Synthetic vaccine, T cell, medicine.anatomical_structure, medicine, Tn antigen, Population, education.field_of_study, education, Vaccination, Biology, Antigen, MESH: Amino Acid Sequence, MESH: Animals, MESH: Humans, MESH: Macaca fascicularis, MESH: Mice, MESH: Mice, Inbred Strains, MESH: Molecular Sequence Data, MESH: Myelin-Associated Glycoprotein, MESH: Peptide Fragments, MESH: Tetanus Toxoid, MESH: Vaccination, MESH: Vaccines, Synthetic, MESH: Antigens, Tumor-Associated, Carbohydrate, MESH: CD4-Positive T-Lymphocytes, MESH: Cancer Vaccines, MESH: Epitopes, T-Lymphocyte, MESH: Female, MESH: H-2 Antigens, MESH: HLA-DRB1 Chains, MESH: Haplotypes, [SDV]Life Sciences [q-bio]

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40317e7e39c61a0774bce9bc1716fe99
http://europepmc.org/articles/PMC4779142

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10

Population genetics analysis of Phlebotomus papatasi sand flies from Egypt and Jordan based on mitochondrial cytochrome b haplotypes

Contributors: Eck Institute for Global Health, University of Notre Dame [Indiana] (UND), Department of Preventive Medicine and Biostatistics [Bethesda], Uniformed Services University of the Health Sciences (USUHS), Laboratory of Malaria and Vector Research [Rockville], National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), National Institutes of Health [Bethesda] (NIH)-National Institutes of Health [Bethesda] (NIH), Faculty of Veterinary Medicine [Irbid, Jordan], Jordan University of Science and Technology [Irbid, Jordan], Vector Biology Research Program [Cairo], U.S. Naval Medical Research Unit, Ege University - EGE (Izmir, Turkey), Laboratoire de Transmission, Contrôle et Immunobiologie des Infections - Laboratory of Transmission, Control and Immunobiology of Infection (LR11IPT02), Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Tehran University of Medical Sciences (TUMS), Department of Tropical Medicine, Military Hospital Hamburg, Al-Quds University, Department of Entomology [Cairo], Université Ain Shams, University of Sabratha, Kuvin Center for the Study of Infectious and Tropical Diseases, Hadassah Hebrew University Medical Center [Jerusalem], This project was supported by contract No. W911NF0410380 from the Department of Defense (DoD) Defense Advanced Research Projects Agency (DARPA) awarded to MAM. OH was supported by a grant from the Eck Institute for Global Health at the University of Notre Dame, a Fulbright Senior Scientist grant, and Zamallah Academic Development Program. CMF was supported by an Arthur J. Schmitt Leadership Fellowship in Science and Engineering and William and Linda Stavropoulos Fellowship in Science., Ege Üniversitesi

Source: Parasites & Vectors
Parasites & Vectors, Vol 11, Iss 1, Pp 1-11 (2018)
Parasites and Vectors
Parasites and Vectors, BioMed Central, 2018, 11 (1), pp.214. ⟨10.1186/s13071-018-2785-9⟩

Subject Terms: Infectious Diseases, Parasitology, Population genetics, Zoology, Cytochrome b, Genetic variation, Phylogeography, Genetic variability, Biology, Phlebotomus, biology.organism_classification, Vector (epidemiology), Range (biology), Research, Phlebotomus papatasi, Sand flies, mtDNA, Egypt, Jordan, Haplotypes, Genetic differentiation, lcsh:Infectious and parasitic diseases, lcsh:RC109-216, MESH: Animals, MESH: Cytochromes b/genetics, MESH: Insect Vectors/classification, MESH: Insect Vectors/genetics, MESH: Insect Vectors/growth & development, MESH: Jordan, MESH: Phlebotomus/classification, MESH: Phlebotomus/genetics, MESH: Phlebotomus/growth & development, MESH: Phylogeography, MESH: Egypt, MESH: Genetic Variation, MESH: Genetics, Population, MESH: Haplotypes, [SDV]Life Sciences [q-bio], [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e6323738de8d282946ae4d6dd2a46f35
https://doi.org/10.1186/s13071-018-2785-9

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11

Author Response: Penetrance of the LHON Mutation m.11778G>A May Depend on Factors Other Than Haplotype or Heteroplasmy Rate

Authors: Khan, Nahid Akhtar, Govindaraj, Periyasamy, Soumittra, Nagasamy, Sharma, Sonika, Srilekha, Sundaramoorthy, Ambika, Selvakumar, Vanniarajan, Ayyasamy, Meena, Angamuthu Kanikannan, Uppin, Megha, Sundaram, Challa, Bindu, Parayil Sankaran, Gayathri, Narayanappa, Taly, Arun, Thangaraj, Kumarasamy

Contributors: Ben Hassine, AbdelHakim, CSIR - Centre for Cellular and Molecular Biology (CCMB), National Institute of Mental Health and Neurosciences [Bagalore, India], Vision Research Foundation - Sankara Nethralaya, Sankara Nethralaya, Medical Research Foundation - Sankara Nethralaya, Nizam's Institute of Medical Sciences (NIMS)

Source: Investigative Ophthalmology & Visual Science
Investigative Ophthalmology & Visual Science, Association for Research in Vision and Ophthalmology, 2018, 59 (1), pp.382. ⟨10.1167/iovs.17-22983⟩

Subject Terms: [SDV] Life Sciences [q-bio], MESH: DNA, Mitochondrial, MESH: Haplotypes, MESH: Humans, MESH: Mutation, MESH: Optic Atrophy, Hereditary, Leber, MESH: Pedigree, MESH: Penetrance, [SDV]Life Sciences [q-bio], ComputingMilieux_MISCELLANEOUS

File Description: application/pdf

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https://hal-riip.archives-ouvertes.fr/pasteur-02020481

12

Variants in the non-coding region of the TLR2 gene associated with infectious subphenotypes in pediatric sickle cell anemia

Authors: Susana David, Anavaj Sakuntabhai, João Lavinha, Liliana Antunes, Anabela Morais, Alexandra Dias, Pedro Aguiar

Contributors: Instituto Nacional de Saùde Dr Ricardo Jorge [Portugal] (INSA), Universidade do Porto, Universidade Nova de Lisboa = NOVA University Lisbon (NOVA), Hospital Prof Doutor Fernando Fonseca [Amadora, Portugal], Hospital de Santa Maria [Lisboa], Génétique fonctionnelle des maladies infectieuses - Functional Genetics of Infectious Diseases, Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris], Universidade de Lisboa (ULISBOA), Universidade do Porto = University of Porto, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Universidade de Lisboa = University of Lisbon (ULISBOA)

Source: Immunogenetics
Immunogenetics, Springer Verlag, 2018, 70 (1), pp.37-51. ⟨10.1007/s00251-017-1013-7⟩

Subject Terms: Genetic variants, Genotype-to-phenotype association, Hemolytic component, Sickle cell anemia, TLR2, Viral and bacterial infection, MESH: Adolescent, MESH: Alleles, MESH: Female, MESH: Genetic Association Studies, MESH: Genotype, MESH: Haplotypes, MESH: Humans, MESH: Introns, MESH: Male, MESH: Phenotype, MESH: Toll-Like Receptor 2, MESH: Young Adult, MESH: Anemia, Sickle Cell, MESH: Child, MESH: Child, Preschool, MESH: Cohort Studies, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie, Agentes Microbianos e Ambiente, Determinantes Imunológicos em Doenças Crónicas, Determinantes da Saúde e da Doença, Doenças Genéticas, Epidemiologia Clínica, Infecções Respiratórias, Patologias do Glóbulo Vermelho, Sickle Cellanemia, Genetic Variants, Viral and Bacterial Infection, Hemolytic Component, Genotype-to-phenotype Association, Genetics, Immunology, SNP, Genotype, Allele, Fetal hemoglobin, Indel, Haplotype, Infectious disease (medical specialty), Biology, medicine.disease, medicine

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d00f864528e4a8f41871d67c98119ff
https://hal-pasteur.archives-ouvertes.fr/pasteur-02003876

13

Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani

Authors: Malgorzata A. Domagalska, Hideo Imamura, Victor Chaumeau, Giovanni Bussotti, Darek Kedra, Cedric Notredame, Gerald F. Späth, Jean-Claude Dujardin, Michel Pagès, Yvon Sterkers, Pablo Prieto Barja, Heinz Himmelbauer, Franck Dumetz, Pascale Pescher

Contributors: Centre for Genomic Regulation [Barcelona] (CRG), Universitat Pompeu Fabra [Barcelona] (UPF)-Centro Nacional de Analisis Genomico [Barcelona] (CNAG), Universitat Pompeu Fabra [Barcelona] (UPF), Parasitologie moléculaire et Signalisation / Molecular Parasitology and Signaling, Institut Pasteur [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM), Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Institute of Tropical Medicine [Antwerp] (ITM), Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), Institute of Molecular Biotechnology (IMBA), Austrian Academy of Sciences (OeAW), Biologie, Génétique et Pathologie des Pathogènes Eucaryotes (MIVEGEC-BioGEPPE), Pathogènes, Environnement, Santé Humaine (EPATH), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), University of Antwerp (UA), Work on samples from the Indian subcontinent was supported by the European Union 7th Framework Programme (EU FP7) (Kaladrug-R, contract 222895), the Belgian Science Policy Office (TRIT, P7/41), the Department of Economy, Science and Innovation in Flanders (ITM-SOFIB) and the Flemish Fund for Scientific Research (G.0.B81.12). We thank Life Science Editors for editing assistance. This study recieved funding from Plan Nacional (BFU2011-28575 to C.N., P.P.B. and D.K.), Center for Genomic Regulation (CRG), Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013–2017’ (SEV-2012–0208), a grant from the Institut Pasteur International Department strategic fund to the LeiSHield consortium (P.P.B., P.P, C.N., G.F.S., G.B. and Y.S.), Agence Nationale de la Recherche (ANR) within the framework of the 'Investissements d’avenir' programme (ANR-11-LABX-0024-01 'PARAFRAP') (V.C., M.P. and Y.S.), the EU FP7 (Kaladrug-R, contract 222895), the Belgian Science Policy Office (TRIT, P7/41), the Department of Economy, Science and Innovation in Flanders (ITM-SOFIB) and the Flemish Fund for Scientific Research (G.0.B81.12) (J.C.D., F.D., H.I. and M.D.)., ANR-11-LABX-0024,ParaFrap,Alliance française contre les maladies parasitaires(2011), European Project: 222895,EC:FP7:HEALTH,FP7-HEALTH-2007-B,KALADRUG-R(2008), Centre for Genomic Regulation [Barcelona] ( CRG ), Universitat Pompeu Fabra [Barcelona]-Centro Nacional de Analisis Genomico [Barcelona] ( CNAG ), Parasitologie moléculaire et Signalisation, Institut Pasteur [Paris]-Institut National de la Santé et de la Recherche Médicale ( INSERM ), Centre National de la Recherche Scientifique ( CNRS ) -Institut Pasteur [Paris], Institute of Tropical Medicine [Antwerp] ( ITM ), Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle ( MIVEGEC ), Université de Montpellier ( UM ) -Centre National de la Recherche Scientifique ( CNRS ) -Institut de Recherche pour le Développement ( IRD [France-Sud] ), Max-Planck-Institut für Molekulare Genetik ( MPIMG ), Max-Planck-Gesellschaft, Work on samples from the Indian subcontinent was supported by the European Union 7th Framework Programme (EU FP7) (Kaladrug-R, contract 222895), the Belgian Science Policy Office (TRIT, P7/41), the Department of Economy, Science and Innovation in Flanders (ITM-SOFIB) and the Flemish Fund for Scientific Research (G.0.B81.12). We thank Life Science Editors for editing assistance. This study recieved funding from Plan Nacional (BFU2011-28575 to C.N., P.P.B. and D.K.), Center for Genomic Regulation (CRG), Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013–2017’ (SEV-2012–0208), a grant from the Institut Pasteur International Department strategic fund to the LeiSHield consortium (P.P.B., P.P, C.N., G.F.S., G.B. and Y.S.), Agence Nationale de la Recherche (ANR) within the framework of the 'Investissements d’avenir' programme (ANR-11-LABX-0024-01 'PARAFRAP') (V.C., M.P. and Y.S.), the EU FP7 (Kaladrug-R, contract 222895), the Belgian Science Policy Office (TRIT, P7/41), the Department of Economy, Science and Innovation in Flanders (ITM-SOFIB) and the Flemish Fund for Scientific Research (G.0.B81.12), ANR-11-LABX-0024/11-LABX-0024,ParaFrap,Alliance française contre les maladies parasitaires ( 2011 ), European Project : 222895,EC:FP7:HEALTH,FP7-HEALTH-2007-B,KALADRUG-R ( 2008 ), Clinical sciences, Medical Genetics, Vriendenkring VUB

Source: Nature Ecology & Evolution
Nature Ecology & Evolution, Nature, 2017, 1 (12), pp.1961-1969. ⟨10.1038/s41559-017-0361-x⟩
Nature Ecology & Evolution, Nature, 2017, 1 (12), pp.1961--1969. 〈10.1038/s41559-017-0361-x〉

Subject Terms: Leishmania donovani, aneuploidy, genome instability, dosage compensation, fitness, haplotypes, MESH: Adaptation, Biological, MESH: Aneuploidy, MESH: Haplotypes, MESH: Leishmania donovani, MESH: Protozoan Proteins, MESH: Selection, Genetic, [SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology, [SDV.GEN]Life Sciences [q-bio]/Genetics, Ecology, Ecology, Evolution, Behavior and Systematics, Selection (genetic algorithm), Haplotype, Function (biology), Genetic diversity, Mutation rate, biology.organism_classification, biology, Genetics, Adaptation, Mechanism (biology), Parasitology, Experimental evolution, Genome evolution, [ SDV ] Life Sciences [q-bio], Biology, Human medicine

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae604ae550baa6edab92d03b257dabb7
https://hal-pasteur.archives-ouvertes.fr/pasteur-02107201

14

Association study of HNF1A polymorphisms with metabolic syndrome in the Moroccan population

Authors: Meryem Hechmi, Sonia Abdelhak, Rachid Saile, Fouzia Lakbakbi el yaagoubi, Imane Morjane, Hicham Charoute, Abdelhamid Barakat, Rym Kefi

Contributors: Laboratoire de Génétique Moléculaire Humaine, Institut Pasteur du Maroc, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Faculté des Sciences Ben M'sik [Casablanca], Université Hassan II [Casablanca] (UH2MC), Laboratoire de Génomique Biomédicale et Oncogénétique - Biomedical Genomics and Oncogenetics Laboratory (LR11IPT05), Université de Tunis El Manar (UTM)-Institut Pasteur de Tunis, Faculté des Sciences Mathématiques, Physiques et Naturelles de Tunis (FST), Université de Tunis El Manar (UTM), This work was supported by Institut Pasteur du Maroc and a grant from the European Commission FP7 Integrated Project MEDIGENE (FP7-279171-1)., European Project: 279171,EC:FP7:HEALTH,FP7-HEALTH-2011-two-stage,MEDIGENE(2012), Ben Hassine, AbdelHakim, Genetic and environmental factors of insulin resistance syndrome and its long-term complications in immigrant Mediterranean populations - MEDIGENE - - EC:FP7:HEALTH2012-01-01 - 2015-12-31 - 279171 - VALID

Source: Diabetes & Metabolic Syndrome: Clinical Research & Reviews
Diabetes & Metabolic Syndrome: Clinical Research & Reviews, Elsevier, 2017, 11 (supplement 2), pp.S853-S857. ⟨10.1016/j.dsx.2017.07.005⟩

Subject Terms: Polymorphism, HNF1A, Haplotype, Metabolic syndrome, MESH: Adolescent, MESH: Adult, MESH: Metabolic Syndrome/genetics, MESH: Middle Aged, MESH: Polymorphism, Single Nucleotide, MESH: Young Adult, MESH: Aged, MESH: Aged, 80 and over, MESH: Female, MESH: Haplotypes, MESH: Hepatocyte Nuclear Factor 1-alpha/genetics, MESH: Humans, MESH: Logistic Models, MESH: Male, [SDV.MHEP]Life Sciences [q-bio]/Human health and pathology, Cardiology and Cardiovascular Medicine, General Medicine, Internal Medicine, medicine.disease, medicine, Population, education.field_of_study, education, Association (object-oriented programming), business.industry, business, Physiology, Endocrinology, Diabetes and Metabolism, Allele, Polymorphism (computer science), Single-nucleotide polymorphism, Diabetes mellitus, Internal medicine, medicine.medical_specialty, Endocrinology, [SDV.MHEP] Life Sciences [q-bio]/Human health and pathology

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0a5d1a31a077bb89be84e99dae47aeea
https://hal.archives-ouvertes.fr/hal-01571303

15

Phylogeography of the small Indian civet and origin of introductions to western Indian Ocean islands

Authors: Bheem Dutt Joshi, Raquel Vasconcelos, Steven M. Goodman, Andreas Wilting, Fabienne Justy, Maraike Willsch, Marie Sigaud, Jörns Fickel, Riddhi P. Patel, Géraldine Veron, André Lourenço, Philippe Gaubert

Contributors: Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), Freie Universität Berlin, Leibniz Institute for Zoo and Wildlife Research (IZW), Leibniz Association, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-Université Pierre et Marie Curie - Paris 6 (UPMC)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Field Museum of Natural History [Chicago, USA], Association Vahatra [Antananarivo, Madagascar], Museum für Naturkunde [Berlin], Institut de Biologia Evolutiva [Barcelona] (IBE / UPF - CSIC), Universitat Pompeu Fabra [Barcelona] (UPF), Universidade do Porto = University of Porto, Office National de la Chasse et de la Faune Sauvage (ONCFS), University of Potsdam = Universität Potsdam, École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226, Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Universidade do Porto, University of Potsdam

Source: Journal of Heredity
Journal of Heredity, Oxford University Press (OUP), 2017, 108 (3), pp.270-279. ⟨10.1093/jhered/esw085⟩
Journal of Heredity, 2017, 108 (3), pp.270-279. ⟨10.1093/jhered/esw085⟩

Subject Terms: Asia, Plio-Pleistocene, Viverridae, biogeography, civet oil, mtDNA, MESH: Animals, MESH: Cytochromes b, MESH: Phylogeography, MESH: Viverridae, MESH: DNA, Mitochondrial, MESH: Evolution, Molecular, MESH: Gene Frequency, MESH: Genetic Variation, MESH: Genome, Mitochondrial, MESH: Haplotypes, MESH: Indian Ocean Islands, MESH: Phylogeny, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics, Genetics (clinical), Genetics, Molecular Biology, Biotechnology, Biogeography, East Asia, Viverricula indica, biology.organism_classification, biology, biology.animal, Civet, Endemism, Phylogeography, Ecology, ddc:570, Institut für Biochemie und Biologie

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c5e720c9b8e7b2c7d07f6cb5ce7f3730
https://hal.umontpellier.fr/hal-03079975

16

Molecular assessment of dhfr/dhps mutations among Plasmodium vivax clinical isolates after introduction of sulfadoxine/pyrimethamine in combination with artesunate in Iran

Authors: Mandana Afsharpad, Navid Dinparast Djadid, Sedigheh Zakeri, Sakineh Pirahmadi

Contributors: Institut Pasteur d'Iran, Réseau International des Instituts Pasteur (RIIP), This study was supported by grants (No. 418 to S. Zakeri) from Institut Pasteur of Iran., Malaria and Vector Research Group (MVRG), Zakeri, Sedigheh, Malaria and Vector Research Group, Biotechnology Research Center ( (MVRG) ), Réseau International des Instituts Pasteur ( RIIP ) -Institut Pasteur d'Iran

Source: Infection, Genetics and Evolution
Infection, Genetics and Evolution, Elsevier, 2012, 12 (1), pp.38-44. ⟨10.1016/j.meegid.2011.10.003⟩
Infection, Genetics and Evolution, Elsevier, 2012, 12 (1), pp.38-44. 〈10.1016/j.meegid.2011.10.003〉

Subject Terms: Infectious Diseases, Microbiology (medical), Genetics, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Microbiology, Plasmodium falciparum, biology.organism_classification, biology, Artesunate, chemistry.chemical_compound, chemistry, Sulfadoxine/pyrimethamine, medicine.drug, medicine, Sulfadoxine, medicine.medical_treatment, DHPS, Pyrimethamine, Haplotype, Plasmodium vivax, Virology, parasitic diseases, Sulfadoxine-pyrimethamine (SP), Mutations, pvdhfr, pvdhps, MESH: Adolescent, MESH: Adult, MESH: Drug Combinations, MESH: Drug Resistance, MESH: Haplotypes, MESH: Humans, MESH: Infant, MESH: Iran, MESH: Malaria, Vivax, MESH: Middle Aged, MESH: Mutation, MESH: Plasmodium vivax, MESH: Aged, MESH: Polymerase Chain Reaction, MESH: Polymorphism, Restriction Fragment Length, MESH: Polymorphism, Single Nucleotide, MESH: Pyrimethamine, MESH: Sequence Analysis, DNA, MESH: Sulfadoxine, MESH: Tetrahydrofolate Dehydrogenase, MESH: Young Adult, MESH: Antimalarials, MESH: Artemisinins, MESH: Child, MESH: Child, Preschool, MESH: Chloroquine, MESH: DNA, Protozoan, MESH: Dihydropteroate Synthase, [SDV.IMM]Life Sciences [q-bio]/Immunology, [SDV.IMM] Life Sciences [q-bio]/Immunology, MESH : Adolescent, MESH : Adult, MESH : Drug Combinations, MESH : Drug Resistance, MESH : Haplotypes, MESH : Humans, MESH : Infant, MESH : Iran, MESH : Malaria, Vivax, MESH : Middle Aged, MESH : Mutation, MESH : Plasmodium vivax, MESH : Aged, MESH : Polymerase Chain Reaction, MESH : Polymorphism, Restriction Fragment Length, MESH : Polymorphism, Single Nucleotide, MESH : Pyrimethamine, MESH : Sequence Analysis, DNA, MESH : Sulfadoxine, MESH : Tetrahydrofolate Dehydrogenase, MESH : Young Adult, MESH : Antimalarials, MESH : Artemisinins, MESH : Child, MESH : Child, Preschool, MESH : Chloroquine, MESH : DNA, Protozoan, MESH : Dihydropteroate Synthase, [ SDV.IMM ] Life Sciences [q-bio]/Immunology

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https://doi.org/10.1016/j.meegid.2011.10.003

17

Inter- and Intraspecies Phylogenetic Analyses Reveal Extensive X–Y Gene Conversion in the Evolution of Gametologous Sequences of Human Sex Chromosomes

Authors: Daniele Sellitto, Rosaria Scozzari, Beniamino Trombetta, Fulvio Cruciani

Contributors: Dipartimento di Biologia e Biotecnologie 'Charles Darwin', Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Istituto di Biologia e Patologia Molecolari, Consiglio Nazionale delle Ricerche [Roma] (CNR), Institut Pasteur, Fondation Cenci Bolognetti - Istituto Pasteur Italia, Fondazione Cenci Bolognetti, Réseau International des Instituts Pasteur (RIIP), This work was supported by Sapienza Università di Roma, Ricerche Universitarie grant number C26A13S9AR to F.C., and Istituto Pasteur—Fondazione Cenci Bolognetti, Programmi di Ricerca 2013–2014 to F.C.

Source: Molecular Biology and Evolution
Molecular Biology and Evolution, Oxford University Press (OUP), 2014, 31 (8), pp.2108-23. ⟨10.1093/molbev/msu155⟩

Subject Terms: Genetics, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Y chromosome, X chromosome, Haplogroup, Phylogenetic tree, Reticulate evolution, Biology, Evolution of sexual reproduction, Sex reversal, Gene conversion, Evolutionary biology, Discoveries, X–Y gene conversion, sex chromosome evolution, human Y chromosome, recombination hotspots, MESH: Animals, MESH: Chromosomes, Human, X, MESH: Phylogeny, MESH: Polymorphism, Single Nucleotide, MESH: Sequence Analysis, DNA, MESH: X Chromosome, MESH: Y Chromosome, MESH: Chromosomes, Human, Y, MESH: Evolution, Molecular, MESH: Female, MESH: Gene Conversion, MESH: Haplotypes, MESH: Humans, MESH: Male, MESH: Pan troglodytes, [SDV.GEN]Life Sciences [q-bio]/Genetics

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::584307e7d62d497f01ce9363d969e6c5
https://doi.org/10.1093/molbev/msu155

18

A Founder Large Deletion Mutation in Xeroderma Pigmentosum-Variant Form in Tunisia: Implication for Molecular Diagnosis and Therapy

Authors: Mariem Chargui, M. Zghal, Olfa Messaoud, Mohamed Samir Boubaker, Houda Yacoub-Youssef, Nadia Laroussi, Manel Jerbi, Sonia Abdelhak, Mariem Jones, Mariem Ben Rekaya, Bécima Fazaa, Mourad Mokni, Rym Kefi, Aida Khaled, Yosra Bouyacoub, Hamouda Boussen, Chokri Naouali

Contributors: Laboratoire de Génomique Biomédicale et Oncogénétique - Biomedical Genomics and Oncogenetics Laboratory (LR11IPT05), Université de Tunis El Manar (UTM)-Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Département de Dermatologie, Hôpital Charles Nicolle [Tunis], Laboratoire d’Anatomie Pathologique Humaine et Expérimentale, Institut Pasteur de Tunis, Département d'Oncologie Médicale, Hôpital Abderrahman Mami, Hôpital La Rabta [Tunis], This work was supported by the Tunisian Ministry of Higher Education and Scientific Research (Laboratory on Biomedical Genomics and Oncogenetics, no. LR 11 IPT 05) and the Tunisian Ministry of Public Health, Pasteur Tunis, Institut

Source: BioMed Research International
BioMed Research International, Hindawi Publishing Corporation, 2014, 2014, pp.256245. ⟨10.1155/2014/256245⟩
BioMed Research International, Vol 2014 (2014)

Subject Terms: General Immunology and Microbiology, General Biochemistry, Genetics and Molecular Biology, General Medicine, Mutation (genetic algorithm), Xeroderma pigmentosum, medicine.disease, medicine, Genetic linkage, Genetics, Haplotype, Sequence analysis, Genetic analysis, Exon, Founder effect, Biology, MESH: Adolescent, MESH: Adult, MESH: Humans, MESH: Male, MESH: Middle Aged, MESH: Sequence Deletion, MESH: Tunisia, MESH: Xeroderma Pigmentosum, MESH: Base Sequence, MESH: Child, MESH: Child, Preschool, MESH: DNA-Directed DNA Polymerase, MESH: Exons, MESH: Female, MESH: Founder Effect, MESH: Haplotypes, [SDV]Life Sciences [q-bio], [SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie, [SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics, [SDV.MHEP.DERM]Life Sciences [q-bio]/Human health and pathology/Dermatology, [SDV] Life Sciences [q-bio], [SDV.SPEE] Life Sciences [q-bio]/Santé publique et épidémiologie, [SDV.GEN.GH] Life Sciences [q-bio]/Genetics/Human genetics, [SDV.MHEP.DERM] Life Sciences [q-bio]/Human health and pathology/Dermatology, lcsh:Medicine, lcsh:R, Research Article, Article Subject

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https://doi.org/10.1155/2014/256245

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19

Taxonomic status and origin of the Egyptian weasel (Mustela subpalmata) inferred from mitochondrial DNA

Authors: Michele Cento, Margarida Santos-Reis, Juha Merilä, Patrick J. Schembri, Şakir Özkurt, Richard Hoath, Carlos Fernandes, Arthur R. Bos, Petros Lymberakis, Mónica Rodrigues, Wissem Ghawar

Contributors: Centre for Ecology - Evolution and Environmental Changes (cE3c), Universidade de Lisboa (ULISBOA), Department of Biosciences [Helsinki], Faculty of Biological and Environmental Sciences [Helsinki], University of Helsinki-University of Helsinki, American University in Cairo, Naturalis Biodiversity Center [Leiden], University of Malta [Malta], Natural History Museum of Crete, Musée d'histoire naturelle de Crète, University of Crete [Heraklion] (UOC), Laboratoire d'Epidémiologie Médicale, Institut Pasteur de Tunis, Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Kırşehir Ahi Evran University, Kırşehir Ahi Evran Üniversitesi, Eğitim Fakültesi, Matematik ve Fen Bilimleri Eğitimi Bölümü

Source: Genetica
Genetica, Springer Verlag, 2016, 144 (2), pp.191--202. ⟨10.1007/s10709-016-9889-y⟩

Subject Terms: Mitochondrial DNA, Molecular systematics, Mustela subpalmata, Phylogeography, Species status, Weasels, MESH: Animals, MESH: Bayes Theorem, MESH: Phylogeny, MESH: Sequence Analysis, DNA, MESH: Cytochromes b/genetics, MESH: DNA, Mitochondrial/genetics, MESH: Egypt, MESH: Genetics, Population, MESH: Haplotypes, MESH: Mediterranean Region, MESH: Mustelidae/genetics, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.BA]Life Sciences [q-bio]/Animal biology, humanities, parasitic diseases, Insect Science, Plant Science, Genetics, Animal Science and Zoology, General Medicine, Zoology, Biology, Least weasel, biology.organism_classification, Egyptian weasel, Genetic divergence, Subspecies, Cytochrome b, Weasel, biology.animal, Mustelidae, Population, education.field_of_study, education

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https://hal.archives-ouvertes.fr/hal-01356516

20

Association of rs9939609 Polymorphism with Metabolic Parameters and FTO Risk Haplotype Among Tunisian Metabolic Syndrome

Authors: Florin Grigorescu, Ines Kamoun, Sahar Elouej, Claude Ben Slama, Om Kalthoum Sallem, Hanen Belfki-Benali, Mariem Chargui, Henda Jamoussi, Habiba Ben Romdhane, Lilia Romdhane, Zinet Turki, Khaled Lasram, Abdelmajid Abid, Rym Kefi, Redha Attaoua, Sonia Abdelhak, Sonia Bahri, Majdi Nagara

Contributors: Laboratoire de Génomique Biomédicale et Oncogénétique - Biomedical Genomics and Oncogenetics Laboratory (LR11IPT05), Université de Tunis El Manar (UTM)-Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Faculté des Sciences Mathématiques, Physiques et Naturelles de Tunis (FST), Université de Tunis El Manar (UTM), Faculté de Médecine de Tunis, Laboratoire d'Endocrinologie Moléculaire, Institut Universitaire de Recherche Clinique, Institut National de Nutrition et de Technologie Alimentaire (Tunis) (INNTA), Department of Endocrinology and Metabolic Diseases [Tunis], National Institute of Nutrition and Food Technology, Laboratoire central de biologie médicale, Institut Pasteur de Tunis, Institut Pasteur de Tunis, This work was supported by the E.C. Grant agreement no. 279171-1 for FP7 project MEDIGENE and by the Tunisian Ministry of Public Health and the Ministry of Higher Education and Scientific Research (LR11IPT05)., Pasteur Tunis, Institut

Source: Metabolic Syndrome and Related Disorders
Metabolic Syndrome and Related Disorders, Mary Ann Liebert, 2016, 14 (2), pp.121-128. ⟨10.1089/met.2015.0090⟩

Subject Terms: MESH: Adult, MESH: Aged, MESH: Triglycerides/blood, MESH: Tunisia, MESH: Genetic Markers, MESH: Biomarkers/blood, MESH: Blood Glucose/analysis, MESH: Blood Pressure/genetics, MESH: Case-Control Studies, MESH: Female, MESH: Gene Frequency, MESH: Genetic Association Studies, MESH: Metabolic Syndrome/physiopathology, MESH: Genetic Predisposition to Disease, MESH: Haplotypes, MESH: Humans, MESH: Male, MESH: Metabolic Syndrome/blood, MESH: Metabolic Syndrome/diagnosis, MESH: Metabolic Syndrome/genetics, MESH: Middle Aged, MESH: Alpha-Ketoglutarate-Dependent Dioxygenase FTO/genetics, MESH: Phenotype, MESH: Polymorphism, Single Nucleotide, MESH: Protective Factors, MESH: Risk Factors, MESH: Sex Factors, [SDV.MHEP.EM]Life Sciences [q-bio]/Human health and pathology/Endocrinology and metabolism, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, nutritional and metabolic diseases, [SDV.MHEP.EM] Life Sciences [q-bio]/Human health and pathology/Endocrinology and metabolism, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, Endocrinology, Diabetes and Metabolism, Internal Medicine, Haplotype, Alpha-Ketoglutarate-Dependent Dioxygenase FTO, Medicine, business.industry, business, Impaired fasting glucose, medicine.disease, Allele frequency, FTO gene, Obesity, Metabolic syndrome, Population, education.field_of_study, education, Genetics

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40196e34877323dcdbc9cad9fcb608ea
https://hal-riip.archives-ouvertes.fr/pasteur-01969533

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