Authors: Yu S; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Vassilev S; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Lim ZR; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Sivalingam J; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Lam ATL; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Ho V; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Renia L; Singapore Immunology Network, Agency for Science, Technology and Research, Singapore, Republic of Singapore.; A*STAR Infectious Diseases Labs, Agency for Science, Technology and Research, Singapore, Republic of Singapore.; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Republic of Singapore.; School of Biological Sciences, Nanyang Technological University, Singapore, Republic of Singapore., Malleret B; Singapore Immunology Network, Agency for Science, Technology and Research, Singapore, Republic of Singapore.; Department of Microbiology and Immunology, Immunology Translational Research Programme, Yong Loo Lin School of Medicine, Immunology Programme, Life Sciences Institute, National University of Singapore, Singapore, Republic of Singapore., Reuveny S; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Oh SKW; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore.

Source: Cell proliferation [Cell Prolif] 2022 Aug; Vol. 55 (8), pp. e13218. Date of Electronic Publication: 2022 Mar 15.

Publication Type: Journal Article

Journal Info: Publisher: Published for the Cell Kinetics Society, the European Study Group for Cell Proliferation, and the International Cell Cycle Society by Blackwell Scientific Publications Country of Publication: England NLM ID: 9105195 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-2184 (Electronic) Linking ISSN: 09607722 NLM ISO Abbreviation: Cell Prolif Subsets: MEDLINE

Authors: Lam ATL; Stem Cell Bioprocessing, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Ho V; Stem Cell Bioprocessing, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Vassilev S; Stem Cell Bioprocessing, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Reuveny S; Stem Cell Bioprocessing, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore., Oh SKW; Stem Cell Bioprocessing, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Singapore, Republic of Singapore.

Source: Cell proliferation [Cell Prolif] 2022 May 19, pp. e13256. Date of Electronic Publication: 2022 May 19.

Publication Type: Journal Article

Journal Info: Publisher: Published for the Cell Kinetics Society, the European Study Group for Cell Proliferation, and the International Cell Cycle Society by Blackwell Scientific Publications Country of Publication: England NLM ID: 9105195 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-2184 (Electronic) Linking ISSN: 09607722 NLM ISO Abbreviation: Cell Prolif Subsets: MEDLINE

Authors: Righelli D; Department of Statistical Sciences, University of Padova, 35121 Padova, Italy., Weber LM; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA., Crowell HL; Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, Zurich, Switzerland., Pardo B; Escuela Nacional de Estudios Superiores Unidad Juriquilla, Universidad Nacional Autónoma de México, Queretaro 76230, Mexico.; Lieber Institute for Brain Development, Baltimore, MD 21205, USA., Collado-Torres L; Lieber Institute for Brain Development, Baltimore, MD 21205, USA., Ghazanfar S; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, United Kingdom., Lun ATL; Genentech, South San Francisco, CA 94080, USA., Hicks SC; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA., Risso D; Department of Statistical Sciences, University of Padova, 35121 Padova, Italy.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2022 May 26; Vol. 38 (11), pp. 3128-3131.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

MeSH Terms: Software* , Transcriptome*, Genomics

Authors: Berrens RV; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK. rebecca.berrens@gmail.com.; Developmental Epigenetics, Department of Biochemistry, University of Oxford, Oxford, UK. rebecca.berrens@gmail.com., Yang A; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Laumer CE; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; Genentech, South San Francisco, CA, USA., Bieberich F; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; ETH Zürich, Basel, Switzerland., Law CT; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; Department of Pathology, Li Ka Shing Faculty of Medicine, University of Hong Kong, Pok Fu Lam, Hong Kong., Lan G; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; School of Biomedical Sciences,Stem Cell and Regenerative Consortium, Centre for PanorOmic Sciences, Li Ka Shing Faculty of Medicine, University of Hong Kong, Pok Fu Lam, Hong Kong., Imaz M; Wellcome Sanger Institute, Cambridge, UK.; Division of Cardiovascular Medicine, University of Cambridge, Cambridge, UK., Bowness JS; Developmental Epigenetics, Department of Biochemistry, University of Oxford, Oxford, UK., Brockdorff N; Developmental Epigenetics, Department of Biochemistry, University of Oxford, Oxford, UK., Gaffney DJ; Wellcome Sanger Institute, Cambridge, UK.; Genomics Plc, Oxford, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK. marioni@ebi.ac.uk.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK. marioni@ebi.ac.uk.; Wellcome Sanger Institute, Cambridge, UK. marioni@ebi.ac.uk.

Source: Nature biotechnology [Nat Biotechnol] 2022 Apr; Vol. 40 (4), pp. 546-554. Date of Electronic Publication: 2021 Nov 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

MeSH Terms: DNA Transposable Elements*/genetics , Induced Pluripotent Stem Cells*, Animals ; Humans ; Mice ; RNA

Authors: Stojic L; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK. l.stojic@qmul.ac.uk.; Centre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, London, EC1M 6BQ, UK. l.stojic@qmul.ac.uk., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.; Genentech, Inc., South San Francisco, CA, USA., Mascalchi P; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.; DRVision Technologies, Bordeaux, France., Ernst C; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.; School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015, Lausanne, Switzerland., Redmond AM; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.; MRC Cancer Unit, Hutchison/MRC Research Centre, University of Cambridge, Cambridge, UK., Mangei J; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.; Molecular Genetics, Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 280, 69120, Heidelberg, Germany., Barr AR; Institute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK.; MRC London Institute of Medical Sciences (LMS), Hammersmith Hospital Campus, Du Cane Road, London, W12 0NN, UK., Bousgouni V; Institute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK., Bakal C; Institute of Cancer Research, 237 Fulham Road, London, SW3 6JB, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK., Odom DT; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK. duncan.odom@cruk.cam.ac.uk.; Division of Regulatory Genomics and Cancer Evolution, Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 280, 69120, Heidelberg, Germany. duncan.odom@cruk.cam.ac.uk., Gergely F; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK. fanni.gergely@cruk.cam.ac.uk.

Source: Nature communications [Nat Commun] 2020 Apr 15; Vol. 11 (1), pp. 1851. Date of Electronic Publication: 2020 Apr 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Authors: Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, UK. aaron.lun@cruk.cam.ac.uk., Riesenfeld S; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Andrews T; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Dao TP; Program for Computational and Systems Biology, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, USA., Gomes T; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, UK. marioni@ebi.ac.uk.; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. marioni@ebi.ac.uk.; EMBL European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. marioni@ebi.ac.uk.

Corporate Authors: participants in the 1st Human Cell Atlas Jamboree

Source: Genome biology [Genome Biol] 2019 Mar 22; Vol. 20 (1), pp. 63. Date of Electronic Publication: 2019 Mar 22.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol

Authors: Griffiths JA; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE, United Kingdom., Richard AC; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE, United Kingdom.; Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, United Kingdom., Bach K; Department of Pharmacology, University of Cambridge, Cambridge, CB2 1PD, United Kingdom., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE, United Kingdom. aaron.lun@cruk.cam.ac.uk., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE, United Kingdom. marioni@ebi.ac.uk.; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, United Kingdom. marioni@ebi.ac.uk.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, United Kingdom. marioni@ebi.ac.uk.

Source: Nature communications [Nat Commun] 2018 Jul 10; Vol. 9 (1), pp. 2667. Date of Electronic Publication: 2018 Jul 10.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Authors: Stojic L; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK., Mangei J; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK., Mascalchi P; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK., Quarantotti V; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK., Barr AR; Institute of Cancer Research, 237 Fulham Road London SW3 6JB, UK., Bakal C; Institute of Cancer Research, 237 Fulham Road London SW3 6JB, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK.; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK., Gergely F; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK., Odom DT; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK.

Source: Nucleic acids research [Nucleic Acids Res] 2018 Jul 06; Vol. 46 (12), pp. 5950-5966.

Publication Type: Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res

Authors: Johanson TM; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Coughlan HD; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Lun ATL; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Bediaga NG; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Naselli G; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia., Garnham AL; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Harrison LC; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Smyth GK; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; School of Mathematics and Statistics, The University of Melbourne, Parkville, Australia., Allan RS; The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia.

Source: PLoS genetics [PLoS Genet] 2018 Jun 08; Vol. 14 (6), pp. e1007431. Date of Electronic Publication: 2018 Jun 08 (Print Publication: 2018).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Authors: Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Cambridge, United Kingdom., Pagès H; Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America., Smith ML; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.

Source: PLoS computational biology [PLoS Comput Biol] 2018 May 03; Vol. 14 (5), pp. e1006135. Date of Electronic Publication: 2018 May 03 (Print Publication: 2018).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Authors: Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, RobinsonWay, Cambridge CB2 0RE, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK.; EMBL European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK and Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

Source: Biostatistics (Oxford, England) [Biostatistics] 2017 Jul 01; Vol. 18 (3), pp. 451-464.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100897327 Publication Model: Print Cited Medium: Internet ISSN: 1468-4357 (Electronic) Linking ISSN: 14654644 NLM ISO Abbreviation: Biostatistics Subsets: MEDLINE

Authors: Amezquita RA; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; Bioinformatics and Computational Biology, Genentech Inc., San Francisco, CA, USA., Becht E; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Carey VJ; Channing Division of Network Medicine, Brigham And Women's Hospital, Boston, MA, USA., Carpp LN; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Geistlinger L; Graduate School of Public Health and Health Policy, City University of New York, New York, NY, USA.; Institute for Implementation Science in Population Health, City University of New York, New York, NY, USA., Marini F; Center for Thrombosis and Hemostasis, Mainz, Germany.; Institute of Medical Biostatistics, Epidemiology and Informatics, Mainz, Germany., Rue-Albrecht K; Kennedy Institute of Rheumatology, University of Oxford, Oxford, UK., Risso D; Department of Statistical Sciences, University of Padua, Padua, Italy.; Division of Biostatistics and Epidemiology, Department of Healthcare Policy and Research, Weill Cornell Medicine, New York, NY, USA., Soneson C; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Waldron L; Graduate School of Public Health and Health Policy, City University of New York, New York, NY, USA.; Institute for Implementation Science in Population Health, City University of New York, New York, NY, USA., Pagès H; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Smith ML; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany., Huber W; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany., Morgan M; Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA., Gottardo R; Fred Hutchinson Cancer Research Center, Seattle, WA, USA. rgottard@fredhutch.org., Hicks SC; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA. shicks19@jhu.edu.

Source: Nature methods [Nat Methods] 2020 Feb; Vol. 17 (2), pp. 242.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: PubMed not MEDLINE; MEDLINE

Authors: Amezquita RA; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; Bioinformatics and Computational Biology, Genentech Inc., San Francisco, CA, USA., Becht E; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Carey VJ; Channing Division of Network Medicine, Brigham And Women's Hospital, Boston, MA, USA., Carpp LN; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Geistlinger L; Graduate School of Public Health and Health Policy, City University of New York, New York, NY, USA.; Institute for Implementation Science in Population Health, City University of New York, New York, NY, USA., Marini F; Center for Thrombosis and Hemostasis, Mainz, Germany.; Institute of Medical Biostatistics, Epidemiology and Informatics, Mainz, Germany., Rue-Albrecht K; Kennedy Institute of Rheumatology, University of Oxford, Oxford, UK., Risso D; Department of Statistical Sciences, University of Padua, Padua, Italy.; Division of Biostatistics and Epidemiology, Department of Healthcare Policy and Research, Weill Cornell Medicine, New York, NY, USA., Soneson C; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Waldron L; Graduate School of Public Health and Health Policy, City University of New York, New York, NY, USA.; Institute for Implementation Science in Population Health, City University of New York, New York, NY, USA., Pagès H; Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Smith ML; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany., Huber W; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany., Morgan M; Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA., Gottardo R; Fred Hutchinson Cancer Research Center, Seattle, WA, USA. rgottard@fredhutch.org., Hicks SC; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA. shicks19@jhu.edu.

Source: Nature methods [Nat Methods] 2020 Feb; Vol. 17 (2), pp. 137-145. Date of Electronic Publication: 2019 Dec 02.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

MeSH Terms: Single-Cell Analysis/*methods, Gene Expression Profiling ; Genome ; High-Throughput Nucleotide Sequencing ; Software

Authors: Messmer T; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, UK; Institute of Pharmacy and Molecular Biotechnology, Heidelberg University, Im Neuenheimer Feld 364, 69120 Heidelberg, Germany., von Meyenn F; Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK; Department of Medical and Molecular Genetics, King's College London, London SE1 9RT, UK., Savino A; Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK., Santos F; Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK., Mohammed H; Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, UK. Electronic address: aaron.lun@cruk.cam.ac.uk., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, UK; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, UK; EMBL European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, UK. Electronic address: marioni@ebi.ac.uk., Reik W; Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, UK. Electronic address: wolf.reik@babraham.ac.uk.

Source: Cell reports [Cell Rep] 2019 Jan 22; Vol. 26 (4), pp. 815-824.e4.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

MeSH Terms: Epigenesis, Genetic* , Sequence Analysis, RNA* , Single-Cell Analysis* , Transcription, Genetic*, Human Embryonic Stem Cells/*metabolism, Cell Line ; Human Embryonic Stem Cells/cytology ; Humans

Authors: Johanson TM; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia., Lun ATL; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia., Coughlan HD; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia., Tan T; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia., Smyth GK; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; School of Mathematics and Statistics, University of Melbourne, Melbourne, Victoria, Australia., Nutt SL; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia. nutt@wehi.edu.au.; Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia. nutt@wehi.edu.au., Allan RS; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia. rallan@wehi.edu.au.; Department of Medical Biology, University of Melbourne, Melbourne, Victoria, Australia. rallan@wehi.edu.au.

Source: Nature immunology [Nat Immunol] 2018 Nov; Vol. 19 (11), pp. 1257-1264. Date of Electronic Publication: 2018 Oct 15.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature America Inc Country of Publication: United States NLM ID: 100941354 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1529-2916 (Electronic) Linking ISSN: 15292908 NLM ISO Abbreviation: Nat Immunol Subsets: MEDLINE

MeSH Terms: B-Lymphocytes/*cytology , Cell Differentiation/*genetics , Cell Lineage/*genetics , PAX5 Transcription Factor/*genetics, Animals ; B-Lymphocytes/metabolism ; Male ; Mice ; Mice, Inbred C57BL ; PAX5 Transcription Factor/metabolism

Authors: Ziv O; Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, UK. omer.ziv@gurdon.cam.ac.uk.; Department of Genetics, University of Cambridge, Cambridge, UK. omer.ziv@gurdon.cam.ac.uk., Gabryelska MM; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, Scotland, UK., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK., Gebert LFR; Department of Integrative Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA., Sheu-Gruttadauria J; Department of Integrative Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA., Meredith LW; Department of Pathology, University of Cambridge, Cambridge, UK., Liu ZY; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China.; School of Medicine (Shenzhen), Sun Yat-sen University, Guangzhou, China., Kwok CK; Department of Chemistry, City University of Hong Kong, Hong Kong, China., Qin CF; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China., MacRae IJ; Department of Integrative Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA., Goodfellow I; Department of Pathology, University of Cambridge, Cambridge, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK., Kudla G; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, Scotland, UK. gkudla@gmail.com., Miska EA; Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, UK. eric.miska@gurdon.cam.ac.uk.; Department of Genetics, University of Cambridge, Cambridge, UK. eric.miska@gurdon.cam.ac.uk.; Wellcome Sanger Institute, Cambridge, UK. eric.miska@gurdon.cam.ac.uk.

Source: Nature methods [Nat Methods] 2018 Oct; Vol. 15 (10), pp. 785-788. Date of Electronic Publication: 2018 Sep 10.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

MeSH Terms: Nucleic Acid Conformation*, High-Throughput Nucleotide Sequencing/*methods , RNA, Viral/*chemistry , RNA, Viral/*metabolism , RNA-Binding Proteins/*metabolism , Zika Virus/*physiology , Zika Virus Infection/*metabolism, Humans ; RNA-Binding Proteins/chemistry ; Sequence Analysis, RNA/methods ; Transcriptome ; Zika Virus/isolation & purification ; Zika Virus Infection/genetics ; Zika Virus Infection/virology

Authors: Richard AC; Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK., Lau WWY; Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.; Department of Haematology, Wellcome - Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK., Göttgens B; Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.; Department of Haematology, Wellcome - Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK. john.marioni@cruk.cam.ac.uk.; European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Cambridge, UK. john.marioni@cruk.cam.ac.uk.; Wellcome Sanger Institute, Cambridge, UK. john.marioni@cruk.cam.ac.uk., Griffiths GM; Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK. gg305@cam.ac.uk.

Source: Nature immunology [Nat Immunol] 2018 Aug; Vol. 19 (8), pp. 849-858. Date of Electronic Publication: 2018 Jul 16.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature America Inc Country of Publication: United States NLM ID: 100941354 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1529-2916 (Electronic) Linking ISSN: 15292908 NLM ISO Abbreviation: Nat Immunol Subsets: MEDLINE

MeSH Terms: Cytotoxicity, Immunologic*, CD8-Positive T-Lymphocytes/*physiology , Receptors, Antigen, T-Cell, alpha-beta/*metabolism, Animals ; Cell Line ; Genome ; Lymphocyte Activation ; Mice ; Mice, Inbred C57BL ; RNA/genetics ; Signal Transduction ; Single-Cell Analysis

Authors: Sivalingam J; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Republic of Singapore jaichandran_sivalingam@bti.a-star.edu.sg steve_oh@bti.a-star.edu.sg., Chen HY; Institute of Molecular and Cellular Biology, Agency for Science, Technology and Research, Republic of Singapore., Yang BX; Institute of Molecular and Cellular Biology, Agency for Science, Technology and Research, Republic of Singapore., Lim ZR; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Republic of Singapore., Lam ATL; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Republic of Singapore., Woo TL; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Republic of Singapore., Chen AK; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Republic of Singapore., Reuveny S; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Republic of Singapore., Loh YH; Institute of Molecular and Cellular Biology, Agency for Science, Technology and Research, Republic of Singapore.; Department of Biological Sciences, National University of Singapore, Republic of Singapore., Oh SK; Stem Cell Group, Bioprocessing Technology Institute, Agency for Science, Technology and Research, Republic of Singapore jaichandran_sivalingam@bti.a-star.edu.sg steve_oh@bti.a-star.edu.sg.

Source: Haematologica [Haematologica] 2018 Jul; Vol. 103 (7), pp. e279-e283. Date of Electronic Publication: 2018 Mar 08.

Publication Type: Letter; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Ferrata Storti Foundation Country of Publication: Italy NLM ID: 0417435 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1592-8721 (Electronic) Linking ISSN: 03906078 NLM ISO Abbreviation: Haematologica

MeSH Terms: Cell Differentiation*/genetics , Erythropoiesis*/genetics , Wnt Signaling Pathway*, Pluripotent Stem Cells/*cytology , Pluripotent Stem Cells/*metabolism, Biomarkers ; Cell Culture Techniques ; Cell Line ; Erythroblasts/cytology ; Erythroblasts/metabolism ; Humans

Authors: Rue-Albrecht K; Kennedy Institute of Rheumatology, University of Oxford, Oxford , OX3 7FY, UK., Marini F; Center for Thrombosis and Hemostasis (CTH), University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany.; Institute for Medical Biostatistics, Epidemiology and Informatics (IMBEI), University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany., Soneson C; SIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, 8057, Switzerland.; Institute of Molecular Life Sciences, University of Zurich, Zurich, 8057, Switzerland., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, CB2 0RE, UK.

Source: F1000Research [F1000Res] 2018 Jun 14; Vol. 7, pp. 741. Date of Electronic Publication: 2018 Jun 14 (Print Publication: 2018).

Publication Type: Journal Article

Journal Info: Publisher: F1000 Research Ltd Country of Publication: England NLM ID: 101594320 Publication Model: eCollection Cited Medium: Print ISSN: 2046-1402 (Print) Linking ISSN: 20461402 NLM ISO Abbreviation: F1000Res Subsets: PubMed not MEDLINE

Authors: Haghverdi L; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.; Institute of Computational Biology, Helmholtz Zentrum München, Munich, Germany., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK., Morgan MD; Wellcome Trust Sanger Institute, Cambridge, UK., Marioni JC; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; Wellcome Trust Sanger Institute, Cambridge, UK.

Source: Nature biotechnology [Nat Biotechnol] 2018 Jun; Vol. 36 (5), pp. 421-427. Date of Electronic Publication: 2018 Apr 02.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

MeSH Terms: High-Throughput Nucleotide Sequencing/*methods , Sequence Analysis, RNA/*methods , Single-Cell Analysis/*methods, Algorithms ; Cluster Analysis ; Data Analysis