Authors: Shoko Sato, Hiroshi Kimura, Akihito Harada, Kazumitsu Maehara, Tetsuya Handa, Yasuyuki Ohkawa, Naoki Goto, Hitoshi Kurumizaka, Masaru Nakao

Source: Nat Protoc. 15(No. 10):3334-3360

Subject Terms: Animals, Cell Line, Cell Line, Tumor, Chromatin/metabolism, Chromatin Immunoprecipitation/methods, Chromatin Immunoprecipitation Sequencing/*methods, Chromosome Mapping/*methods, DNA-Binding Proteins/*analysis, Epigenesis, Genetic/genetics, Epigenomics/methods, Gene Library, Genome, Genomics, High-Throughput Nucleotide Sequencing/methods, Histones/metabolism, Humans, Mice, Protein Processing, Post-Translational/genetics, Sequence Analysis, DNA/methods, Transcription Factors/metabolism, Transposases/metabolism, General Biochemistry, Genetics and Molecular Biology, Chemistry, Chromatin immunoprecipitation, Transcription factor, Computational biology, Transcription (biology), Epigenomics, Whole genome sequencing, Genomic library, Target protein, Chromatin

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c50bc452fda4a4a158547265a477299
http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100852388

Authors: Claude Van Campenhout, Ricardo De Mendonça, Barbara Alexiou, Sarah De Clercq, Marie-Lucie Racu, Claire Royer-Chardon, Stefan Rusu, Marie Van Eycken, Maria Artesi, Keith Durkin, Patrick Mardulyn, Vincent Bours, Christine Decaestecker, Myriam Remmelink, Isabelle Salmon, Nicky D'Haene

Source: The Journal of molecular diagnostics, 23 (9
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Genome Sequencing from Post-Mortem Formalin-Fixed, Paraffin-Embedded Lung Tissues. The Journal of Molecular Diagnostics. (2021).

Subject Terms: Médecine pathologie humaine, Anatomopathologie, Histopathologie, Virologie médicale, Biologie moléculaire, Autopsy, COVID-19 -- pathology -- virology, Formaldehyde, Genome, Viral -- genetics, High-Throughput Nucleotide Sequencing -- methods, Humans, Lung -- pathology -- virology, Paraffin Embedding, Real-Time Polymerase Chain Reaction -- methods, SARS-CoV-2 -- genetics -- isolation & purification, Tissue Fixation -- methods, FFPE, NGS, SARS-CoV-2, Sequencing, formalin-fixed paraffin-embedded tissue, Biochemistry, biophysics & molecular biology [Life sciences], Biochimie, biophysique & biologie moléculaire [Sciences du vivant], Molecular Medicine, Pathology and Forensic Medicine

File Description: 2 full-text file(s): application/pdf; application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ba0cbbdf0966b7dc7c888570209d86b
http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/332152

Authors: Alireza Pasdar, Katarina Cisarova, Andrea Superti-Furga, Carlo Rivolta, Virginie G. Peter, Neda Sepahi, Arash Salmaninejad, Luisa Coutinho Santos, Mehran Piran, Majid Mojarrad, Ana Berta Sousa, Ali Ghanbari Asad, Mathieu Quinodoz, Raquel Rodrigues, Béryl Royer Bertrand, Nicola Bedoni

Source: Nature Communications, Vol 12, Iss 1, Pp 1-7 (2021)
Nature Communications
Nature communications, vol. 12, no. 1, pp. 518

Subject Terms: lcsh:Science, lcsh:Q, Article, Bioinformatics, Consanguinity, Genomics, Next-generation sequencing, Chromosome Mapping/methods, Computational Biology/methods, Genetic Predisposition to Disease/genetics, Genome, Human/genetics, Genotype, High-Throughput Nucleotide Sequencing/methods, Homozygote, Humans, Internet, Mutation, Polymorphism, Single Nucleotide, Reproducibility of Results, Software, Whole Exome Sequencing/methods, General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Computer science, Creative commons, License, World Wide Web, Permission, Credit line

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2a2c3b02407893cc63692f43ede378f
https://edoc.unibas.ch/81884/

Authors: Jean-Yves Roignant, Florian Pichot, Thomas Kemmer, Yuri Motorin, Andreas Hildebrandt, Claudia Höbartner, Julian König, Tina Lence, Stephan Werner, Virginie Marchand, Mark Helm, Aurellia Galliot, Maksim V. Sednev

Contributors: Johannes Gutenberg - Universität Mainz (JGU), Ingénierie, Biologie et Santé en Lorraine (IBSLor), Université de Lorraine (UL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), University of Würzburg, Institute of Molecular Biology (IMB), Center for Integrative Genomics - Institute of Bioinformatics, Génopode (CIG), Swiss Institute of Bioinformatics [Lausanne] (SIB), Université de Lausanne (UNIL)-Université de Lausanne (UNIL), Ingénierie Moléculaire et Physiopathologie Articulaire (IMoPA), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)

Source: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2020, ⟨10.1093/nar/gkaa1173⟩
Nucleic acids research, vol. 49, no. 4, pp. e23

Subject Terms: [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Adenosine/analogs & derivatives, Adenosine/analysis, Algorithms, Animals, Chromatography, Liquid, Deamination, Drosophila melanogaster/genetics, HEK293 Cells, HeLa Cells, High-Throughput Nucleotide Sequencing/methods, Humans, RNA/chemistry, RNA, Long Noncoding/chemistry, RNA, Messenger/chemistry, RNA, Ribosomal, 18S/chemistry, Sequence Alignment, Sequence Analysis, RNA/methods, Tandem Mass Spectrometry, AcademicSubjects/SCI00010, Narese/13, Methods Online, Genetics, RNA, Transcriptome, Nucleobase, Computational biology, Bisulfite sequencing, Ribosomal RNA, Immunoprecipitation, Amplicon, Biology

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a5a3da39a645358b584c4beb2957407
https://hal.univ-lorraine.fr/hal-03093648

Authors: Katalin Kiss, Maria Rossing, Finn Cilius Nielsen, Majbritt Busk Madsen, Finn Noe Bennedbæk

Source: Frontiers in Endocrinology
Madsen, M B, Kiss, K, Cilius Nielsen, F, Bennedbæk, F N & Rossing, M 2020, ' Amplicon-Based NGS Panels for Actionable Cancer Target Identification in Follicular Cell-Derived Thyroid Neoplasia ', Frontiers in Endocrinology, vol. 11, 146 . https://doi.org/10.3389/fendo.2020.00146
Frontiers in Endocrinology, Vol 11 (2020)

Subject Terms: Endocrinology, Original Research, follicular cell-derived thyroid neoplasia, FFPE-preserved DNA, next-generation sequencing, somatic mutation profile, somatic variant classification, Adenocarcinoma, Follicular/diagnosis, Biomarkers, Tumor/genetics, DNA, Neoplasm/analysis, High-Throughput Nucleotide Sequencing/methods, Humans, Mutation, Paraffin Embedding, Thyroid Neoplasms/diagnosis, Tissue Fixation, Journal Article, Research Support, Non-U.S. Gov't, lcsh:Diseases of the endocrine glands. Clinical endocrinology, lcsh:RC648-665, Endocrinology, Diabetes and Metabolism, Neuroblastoma RAS viral oncogene homolog, Follicular cell, medicine.disease_cause, medicine, Biology, Cancer, medicine.disease, Computational biology, Mutation frequency, Personalized medicine, business.industry, business, Germline mutation, Amplicon

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60fa81a562c0ac0d172ef5c5a262a0b3
http://europepmc.org/articles/PMC7105679

Authors: Sofie Lindgren Christiansen, Stine B. Jacobsen, Niels Morling, Clàudia Congost-Teixidor, Jeppe Dyrberg Andersen, Linea Christine Trudsø, Marie-Louise Kampmann

Source: Trudsø, L C, Andersen, J D, Jacobsen, S B, Christiansen, S L, Congost-Teixidor, C, Kampmann, M-L & Morling, N 2020, ' A comparative study of single nucleotide variant detection performance using three massively parallel sequencing methods ', PLoS ONE, vol. 15, no. 9, e0239850 . https://doi.org/10.1371/journal.pone.0239850
PLoS ONE
PLoS ONE, Vol 15, Iss 9, p e0239850 (2020)

Subject Terms: Alleles, Cardiomyopathies/genetics, Channelopathies/genetics, Exome, Genome, Human, Genotype, High-Throughput Nucleotide Sequencing/methods, Humans, Polymorphism, Single Nucleotide, Sensitivity and Specificity, Sequence Analysis, DNA/methods, Whole Exome Sequencing/methods, Comparative Study, Journal Article, Multidisciplinary, Computational biology, Whole genome sequencing, DNA sequencing, Biology, Human genetics, Genomics, Medical genetics, medicine.medical_specialty, medicine, Exome sequencing, Massive parallel sequencing, Gene, Research Article, Biology and Life Sciences, Molecular Biology, Molecular Biology Techniques, Sequencing Techniques, Genome Sequencing, Research and Analysis Methods, Genetics, Genetic Loci, Nucleotide Sequencing, Heredity, Heterozygosity, Homozygosity, Gene Sequencing, Genetic Mapping, Variant Genotypes, Medicine, Science

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cadd0ad0036109082d4941cb3b077583
https://curis.ku.dk/portal/da/publications/a-comparative-study-of-single-nucleotide-variant-detection-performance-using-three-massively-parallel-sequencing-methods(72b72c4b-307b-40da-8558-49390beeee29).html

Authors: Merete Blixenkrone-Møller, Majken Lindholm Olesen, Eva Sandberg, Lotte Leick Jørgensen, Peer Lyng Frandsen, Erik Østergaard, Helena Fridholm, Eva Rauhe Bækdahl, Anders Fomsgaard, Maiken Worsøe Rosenstierne

Source: Olesen, M L, Jørgensen, L L, Blixenkrone-Møller, M, Sandberg, E, Frandsen, P L, Østergaard, E, Bækdahl, E R, Fridholm, H, Fomsgaard, A & Rosenstierne, M W 2018, ' Screening for viral extraneous agents in live-attenuated avian vaccines by using a microbial microarray and sequencing ', Biologicals, vol. 51, pp. 37-45 . https://doi.org/10.1016/j.biologicals.2017.10.005

Subject Terms: Pharmacology, General Immunology and Microbiology, Applied Microbiology and Biotechnology, General Medicine, Bioengineering, Biotechnology, Endogenous retrovirus, Locus (genetics), Computational biology, Whole Genome Amplification, Genome, Biology, Attenuated vaccine, Alpharetrovirus, biology.organism_classification, Virology, Microarray, DNA microarray, Avian vaccines, Extraneous agents, Sequencing, SPF eggs, Specific Pathogen-Free Organisms, Vaccines, Attenuated/immunology, Endogenous Retroviruses/genetics, Chick Embryo, Drug Contamination/prevention & control, High-Throughput Nucleotide Sequencing/methods, Oligonucleotide Array Sequence Analysis/methods, Animals, Chickens, Viral Vaccines/immunology

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::09a814eefc34de836f5bc2281faec21a
https://api.elsevier.com/content/article/PII:S1045105617301318?httpAccept=text/xml

Authors: Fonager, Jannik, Stegger, Marc, Rasmussen, Lasse Dam, Poulsen, Mille Weismann, Rønn, Jesper, Andersen, Paal Skytt, Fischer, Thea Kølsen

Source: Scientific Reports, Vol 7, Iss 1, Pp 1-11 (2017)
Fonager, J, Stegger, M, Rasmussen, L D, Poulsen, M W, Rønn, J, Andersen, P S & Fischer, T K 2017, ' A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants ', Scientific Reports, vol. 7, 813 . https://doi.org/10.1038/s41598-017-00926-x
Scientific Reports
Fonager, J, Stegger, M, Rasmussen, L D, Poulsen, M W, Ronn, J, Andersen, P S & Fischer, T K 2017, ' A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants ', Scientific Reports, vol. 7, 813 . https://doi.org/10.1038/s41598-017-00926-x

Subject Terms: lcsh:Medicine, lcsh:R, lcsh:Science, lcsh:Q, Caliciviridae Infections/epidemiology, Disease Outbreaks, Genotyping Techniques/methods, High-Throughput Nucleotide Sequencing/methods, Humans, Norovirus/genetics, Sequence Analysis, DNA/methods, Multidisciplinary, Enterovirus, medicine.disease_cause, medicine, DNA sequencing, Genotyping Techniques, Norovirus, Genome, Biology, Virology, Genotype, Outbreak, Hypervariable region, Article, Journal Article

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a10dd3c172a5c8f65266f07c0e5d04b7
https://doaj.org/article/464482d500ad46929117eb437f8421f3

Authors: Eijkelenboom, Astrid, Tops, Bastiaan B. J., van den Berg, Anke, van den Brule, Adrianus J. C., Dinjens, Winand N. M., Dubbink, Hendrikus J., ter Elst, Arja, Geurts-Giele, Willemina R. R., Groenen, Patricia J. T. A., Groenendijk, Floris H., Heideman, Daniëlle A. M., Huibers, Manon M. H., Huijsmans, Cornelis J. J., Jeuken, Judith W. M., van Kempen, L. on C., Korpershoek, Esther, Kroeze, Leonie I., de Leng, Wendy W. J., van Noesel, Carel J. M., Speel, Ernst-Jan M., Vogel, Maartje J., van Wezel, Tom, Nederlof, Petra M., Schuuring, Ed, Ligtenberg, Marjolijn J. L.

Contributors: Stem Cell Aging Leukemia and Lymphoma (SALL), Damage and Repair in Cancer Development and Cancer Treatment (DARE), Targeted Gynaecologic Oncology (TARGON), Pathology, CCA - Imaging and biomarkers, Pathologie, RS: GROW - R3 - Basic and Translational Cancer Biology, Erasmus MC: University Medical Center Rotterdam, Department of Pathology, Medical Microbiology and Infection Control

Source: Virchows Archiv : an International Journal of Pathology, 474(6), 673-680. SPRINGER
Virchows Archiv. Springer Verlag
Virchows Archiv, 474, 673-680
Virchows Archiv, 474(6), 673-680. Springer, Cham
Virchows Archiv, 474(6), 673-680
Virchows Archives, 474, 673. Springer Verlag
Virchows Archiv, 474, 673-680. Springer Verlag
Virchows Archiv
Virchows Archiv, 474(6), 673-680. SPRINGER

Subject Terms: Copy number gain, Amplification, NGS, Targeted therapy, Routine diagnostics, Molecular pathology, MOLECULAR-PATHOLOGY, MUTATIONS, MET, ASSOCIATION, VARIANTS, ONCOLOGY, Pathology and Forensic Medicine, Molecular Biology, Cell Biology, DNA Copy Number Variations/physiology, Gene Dosage/genetics, Genetic Testing, High-Throughput Nucleotide Sequencing/methods, Humans, Mutation/genetics, Pathology, Molecular/methods, Sequence Analysis, DNA/methods, Journal Article, Pathology, Molecular/methods, Sequence Analysis, DNA/methods, Original Article, General Medicine, Genetic testing, medicine.diagnostic_test, medicine, Computer science, Copy-number variation, Gene copy, Correlation and dependence, Gene panel, Computational biology, Clinical report

File Description: application/pdf; text/plain

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cfb34cb11dbb64cc21ab611bcf3b6f06
https://research.rug.nl/en/publications/recommendations-for-the-clinical-interpretation-and-reporting-of-copy-number-gains-using-gene-panel-ngs-analysis-in-routine-diagnostics(eea8d45c-e474-432f-bd88-5d376eba0141).html

Authors: Bezler, Alexandra, Braukmann, Fabian, West, Sean M., Duplan, Arthur, Conconi, Raffaella, Schütz, Frédéric, Gönczy, Pierre, Piano, Fabio, Gunsalus, Kristin, Miska, Eric A., Keller, Laurent

Source: PLoS Genetics
PLoS Genetics, vol. 15, no. 2, pp. e1007905
PLoS Genetics, Vol 15, Iss 2, p e1007905 (2019)

Subject Terms: Cancer Research, Genetics(clinical), Genetics, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Small interfering RNA, Biology, Germline, RNA interference, Caenorhabditis elegans, biology.organism_classification, microRNA, Piwi-interacting RNA, Gene silencing, Regulation of gene expression, Research Article, Biology and life sciences, Gene expression, Gene regulation, Small interfering RNAs, Biochemistry, Nucleic acids, RNA, Non-coding RNA, Anatomy, Reproductive System, Genital Anatomy, Gonads, Medicine and Health Sciences, Epigenetics, Genetic interference, Natural antisense transcripts, MicroRNAs, Molecular biology techniques, Sequencing techniques, RNA sequencing, Research and analysis methods, Animal Studies, Experimental Organism Systems, Model Organisms, Caenorhabditis Elegans, Animal Models, Organisms, Eukaryota, Animals, Invertebrates, Nematoda, Caenorhabditis, Cell Biology, Cellular Types, Animal Cells, Germ Cells, Sperm, Caenorhabditis elegans/genetics, Caenorhabditis elegans Proteins/genetics, Female, Gene Expression Regulation/genetics, Germ Cells/physiology, Gonads/physiology, High-Throughput Nucleotide Sequencing/methods, Male, MicroRNAs/genetics, RNA Interference/physiology, RNA, Double-Stranded/genetics, RNA, Messenger/genetics, RNA, Small Interfering/genetics, Sex Characteristics, lcsh:Genetics, lcsh:QH426-470

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d5b475513f2390791ae200972535565b

Authors: Klemm, Paul, Frommolt, Peter, Kornfeld, Jan-Wilhelm

Source: Klemm, P, Frommolt, P & Kornfeld, J W 2019, ' s ·nr : a visual analytics framework for contextual analyses of private and public RNA-seq data ', BMC Genomics, vol. 20, 85 . https://doi.org/10.1186/s12864-018-5396-0
BMC Genomics
BMC Genomics, Vol 20, Iss 1, Pp 1-12 (2019)

Subject Terms: Animals, Computer Graphics, Gene Expression Profiling/methods, High-Throughput Nucleotide Sequencing/methods, Mice, Sequence Analysis, RNA/methods, Software, User-Computer Interface, Genetics, Biotechnology, Proteomics, Biology, Computational biology, DNA sequencing, Visualization, DNA microarray, Visual analytics, RNA-Seq, Differentially expressed genes, Next-generation sequencing, RNA-seq, Analysis workflow, GUI, lcsh:Biotechnology, lcsh:TP248.13-248.65, lcsh:Genetics, lcsh:QH426-470, GO analysis, Gene filtering

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::54aeabfcfd38b5241463dd06aad0267f
https://findresearcher.sdu.dk:8443/ws/files/146020480/s12864_018_5396_0.pdf

Authors: Mónica Suárez Korsnes, Ignacio Ochoa Garrido, Tijana Stankovic, Radka Vaclavikova, Milica Pešić, Yehuda G. Assaraf, Luca Andrei, Sandor Kasas

Source: Drug Resistance Updates
Drug resistance updates, vol. 48, pp. 100658

Subject Terms: 3D cultures, Atomic force microscopy, Cancer multidrug resistance, Microfluidic devices, Next-generation sequencing, Single live-cell tracking, Pharmacology (medical), Infectious Diseases, Cancer Research, Pharmacology, Oncology, Medicine, business.industry, business, Cancer cell, Transcriptome, Genome instability, Multiple drug resistance, Tumor microenvironment, Cancer, medicine.disease, Computational biology, Epigenetics, Drug resistance, Animals, Biotechnology/methods, Cell Culture Techniques/methods, Drug Resistance, Multiple/genetics, Drug Resistance, Neoplasm/genetics, High-Throughput Nucleotide Sequencing/methods, Humans, Microscopy, Atomic Force/methods, Neoplasms/genetics, Neoplasms/pathology, Tumor Microenvironment/genetics

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f964cac0c4545e6fbfbd29e9725476cc
https://www.sciencedirect.com/science/article/pii/S136876461930055X?via=ihub

Authors: Vaeth, Signe, Christensen, Rikke, Dunø, Morten, Lildballe, Dorte Launholt, Thorsen, Kasper, Vissing, John, Svenstrup, Kirsten, Hertz, Jens Michael, Andersen, Henning, Jensen, Uffe Birk

Source: Vaeth, S, Christensen, R, Dunø, M, Lildballe, D L, Thorsen, K, Vissing, J, Svenstrup, K, Hertz, J M, Andersen, H & Jensen, U B 2019, ' Genetic analysis of Charcot-Marie-Tooth disease in Denmark and the implementation of a next generation sequencing platform ', European Journal of Medical Genetics, vol. 62, no. 1, pp. 1-8 . https://doi.org/10.1016/j.ejmg.2018.04.003
Væth, S, Christensen, R, Dunø, M, Lildballe, D L, Thorsen, K, Vissing, J, Svenstrup, K, Hertz, J M, Andersen, H & Jensen, U B 2018, ' Genetic analysis of Charcot-Marie-Tooth disease in Denmark and the implementation of a next generation sequencing platform ', European Journal of Medical Genetics . https://doi.org/10.1016/j.ejmg.2018.04.003

Subject Terms: Genetics(clinical), Genetics, General Medicine, Genetic analysis, Genetic epidemiology, Genetic testing, medicine.diagnostic_test, medicine, DNA sequencing, Disease, business.industry, business, Cohort, Sanger sequencing, symbols.namesake, symbols, Massive parallel sequencing, Computational biology, Charcot-Marie-Tooth Disease/diagnosis, Denmark, Facilities and Services Utilization, Genetic Testing/methods, High-Throughput Nucleotide Sequencing/methods, Humans, Registries, Sequence Analysis, DNA/methods, Journal Article, Charcot-Marie-Tooth Disease, Massively parallel sequencing, congenital, hereditary, and neonatal diseases and abnormalities, nervous system diseases

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e955f114ac94c1026e6a329c05d8a7fa

Authors: Simon H. Williams, Samuel Cordey, Nishit Bhuva, Florian Laubscher, Mary-Anne Hartley, Noémie Boillat-Blanco, Zainab Mbarack, Josephine Samaka, Tarsis Mlaganile, Komal Jain, Valerie d’Acremont, Laurent Kaiser, W. Ian Lipkin

Source: mSphere
mSphere, Vol 3, Iss 4, p e00311-18 (2018)
mSphere, vol. 3, no. 4, pp. e00311-18
mSphere, Vol. 3, No 4 (2018)
mSphere, Vol 3, Iss 4 (2018)

Subject Terms: Observation, Clinical Science and Epidemiology, UHTS, VirCapSeq-VERT, febrile illness, sequencing, virology, lcsh:Microbiology, lcsh:QR1-502, Fever/blood, Fever/virology, Genome, Viral, High-Throughput Nucleotide Sequencing/methods, Humans, Plasma/virology, Tanzania, Virus Diseases/diagnosis, Viruses/genetics, Molecular Biology, Microbiology, Computational biology, Virus, Human virome, Outbreak, Pegivirus, biology.organism_classification, biology, Genome, DNA sequencing, Dengue virus, medicine.disease_cause, medicine, Epidemiology, medicine.medical_specialty, ddc:616, QR1-502

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce9927396ef0b0993a5b0aef669d0e93
http://europepmc.org/articles/PMC6106054

Authors: Joensen, K G, Engsbro, A L Ø, Lukjancenko, O, Kaas, R S, Lund, O, Westh, H, Aarestrup, F M

Source: European Journal of Clinical Microbiology & Infectious Diseases
Joensen, K G, Engsbro, A L Ø, Lukjancenko, O, Kaas, R S, Lund, O, Westh, H & Aarestrup, F M 2017, ' Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease ', European Journal of Clinical Microbiology & Infectious Diseases, vol. 36, no. 7, pp. 1325-1338 . https://doi.org/10.1007/s10096-017-2947-2

Subject Terms: Original Article, Infectious Diseases, Microbiology (medical), General Medicine, Pathogenic bacteria, medicine.disease_cause, medicine, Microbiology, Diarrhoeal disease, Direct sequencing, DNA sequencing, Virulence, Medical microbiology, medicine.medical_specialty, Giardia, biology.organism_classification, biology, Pathogen, SDG 3 - Good Health and Well-being, Adolescent, Adult, Aged, Aged, 80 and over, Child, Child, Preschool, Denmark, Diarrhea/diagnosis, Feces/microbiology, Female, High-Throughput Nucleotide Sequencing/methods, Hospitals, University, Humans, Infant, Infant, Newborn, Male, Middle Aged, Molecular Diagnostic Techniques/methods, Young Adult, Evaluation Study, Journal Article

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bab59db121eea4269b571fb46cbe5017
http://europepmc.org/articles/PMC5495851

Authors: Liu, Xue, Gallay, Clement, Kjos, Morten, Domenech, Arnau, Slager, Jelle, Kessel, Sebastiaan P, Knoops, Kèvin, Sorg, Robin A, Zhang, Jing‐Ren, Veening, Jan‐Willem

Contributors: Molecular Genetics, Host-Microbe Interactions, Molecular Cell Biology

Source: Molecular Systems Biology, 13(5):931, 1-18. Wiley-Blackwell
Molecular Systems Biology
Molecular systems biology, vol. 13, no. 5, pp. 931

Subject Terms: bacterial cell wall, competence, DNA replication, gene essentiality, teichoic acid biosynthesis, Article, Articles, Chromatin, Epigenetics, Genomics & Functional Genomics, Genome-Scale & Integrative Biology, Microbiology, Virology & Host Pathogen Interaction, Applied Mathematics, Computational Theory and Mathematics, General Agricultural and Biological Sciences, General Immunology and Microbiology, General Biochemistry, Genetics and Molecular Biology, Information Systems, Phenotype, Genomic library, Drug discovery, Gene knockdown, Psychological repression, Genetics, Gene, Gene regulatory network, Biology, CRISPR interference, Bacterial Proteins/genetics, Cell Cycle Proteins/genetics, Clustered Regularly Interspaced Short Palindromic Repeats, Endopeptidase Clp/genetics, Gene Expression Regulation, Bacterial, Gene Library, Gene Regulatory Networks, Genes, Bacterial, Genes, Essential, High-Throughput Nucleotide Sequencing/methods, Peptidoglycan/biosynthesis, Peptidoglycan/genetics, Streptococcus pneumoniae/genetics, Teichoic Acids/biosynthesis, Teichoic Acids/genetics

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::daca35133bc6bbf0113fdecedbcd15c3

Authors: Ongen Halit, Dermitzakis Emmanouil T

Source: American Journal of Human Genetics, Vol. 97, No 4 (2015) pp. 567-575
American journal of human genetics

Subject Terms: Genetics(clinical), Genetics, Article, ddc:576.5, African Continental Ancestry Group/genetics, Algorithms, Alternative Splicing, Cohort Studies, European Continental Ancestry Group/genetics, Gene Expression Profiling, Genome, Human, High-Throughput Nucleotide Sequencing/methods, Humans, Protein Isoforms, Quantitative Trait Loci, Sequence Analysis, RNA/methods, Software, Replicate, Human genome, Alternative splicing, Quantitative trait locus, Computational biology, Gene expression profiling, RNA splicing, Biology, Population, education.field_of_study, education, Genome

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1871a029039a5608f8d6ee22a04e2bbe

Authors: Krøigård, Anne Bruun, Larsen, Martin Jakob, Lænkholm, Anne-Vibeke, Knoop, Ann S., Jensen, Jeanette Dupont, Bak, Martin, Mollenhauer, Jan, Thomassen, Mads, Kruse, Torben A.

Source: PLoS ONE, Vol 13, Iss 1, p e0189887 (2018)
Krøigård, A B, Larsen, M J, Lænkholm, A-V, Knoop, A S, Jensen, J D, Bak, M, Mollenhauer, J, Thomassen, M & Kruse, T A 2018, ' Identification of metastasis driver genes by massive parallel sequencing of successive steps of breast cancer progression ', PLoS ONE, vol. 13, no. 1, e0189887 . https://doi.org/10.1371/journal.pone.0189887
PLoS ONE
Krøigård, A B, Larsen, M J, Lænkholm, A-V, Knoop, A S, Jensen, J D, Bak, M, Mollenhauer, J, Thomassen, M & Kruse, T A 2018, ' Identification of metastasis driver genes by massive parallel sequencing of successive steps of breast cancer progression ', PLOS ONE, vol. 13, no. 1, e0189887 . https://doi.org/10.1371/journal.pone.0189887

Subject Terms: lcsh:Medicine, lcsh:R, lcsh:Science, lcsh:Q, Multidisciplinary, Cancer, medicine.disease, medicine, Exome sequencing, Deep sequencing, Massive parallel sequencing, Breast cancer, Mutation, medicine.disease_cause, Metastasis, Biology, Cancer research, Germline mutation, Breast Neoplasms/genetics, Female, High-Throughput Nucleotide Sequencing/methods, Humans, Neoplasm Metastasis/genetics, Journal Article, Research Support, Non-U.S. Gov't, Research Article, Medicine and Health Sciences, Oncology, Basic Cancer Research, Biology and Life Sciences, Genetics, Frameshift Mutation, Cancers and Neoplasms, Metastatic Tumors, Research and Analysis Methods, Database and Informatics Methods, Biological Databases, Mutation Databases, Breast Tumors, Breast Cancer, Gene Identification and Analysis, Mutation Detection, Somatic Mutation

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8bdbb8e7b2677b7ebfd05b0c4ef81f13
http://europepmc.org/articles/PMC5749725?pdf=render

Authors: Tagini, F., Greub, G.

Source: European journal of clinical microbiology & infectious diseases, vol. 36, no. 11, pp. 2007-2020
European Journal of Clinical Microbiology & Infectious Diseases

Subject Terms: Bacteria/genetics, Bacteria/pathogenicity, Base Sequence, Genome, Bacterial/genetics, High-Throughput Nucleotide Sequencing/methods, Humans, Multilocus Sequence Typing/methods, Virulence/genetics, Clinical microbiology, Genomics, Next-generation sequencing, Whole-genome sequencing, Review, Infectious Diseases, Microbiology (medical), General Medicine, Chlamydia trachomatis, medicine.disease_cause, medicine, Genome, Medical microbiology, medicine.medical_specialty, Microbiology, Computational biology, Bacterial genome size, Biology, Whole genome sequencing, Typing, Virulence

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4705948e1a83da9996fb58be14bd1219
https://serval.unil.ch/notice/serval:BIB_49356DED3F2E

Authors: Mathieu Quinodoz, Katarina Cisarova, Carlo Rivolta, Andrea Superti-Furga, Beryl Royer-Bertrand, Silvio Alessandro Di Gioia

Source: American journal of human genetics, vol. 101, no. 4, pp. 623-629

Subject Terms: Databases, Genetic, Genes, Dominant, Genetic Diseases, Inborn/genetics, Genome, Human, Genomics, High-Throughput Nucleotide Sequencing/methods, Humans, Machine Learning, Mutation, Software, Genetics(clinical), Genetics, Domino, Candidate gene, False positive paradox, Human genome, Dominance (genetics), Mendelian inheritance, symbols.namesake, symbols, Biology, Inheritance Patterns, Report

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dfd483e372f80fc3876ab886d891cf85
https://serval.unil.ch/resource/serval:BIB_5037815084FE.P002/REF.pdf