Search Results - "DNA Transposable Elements genetics"

1

Six reference-quality genomes reveal evolution of bat adaptations

Contributors: University of St Andrews.School of Biology

Source: Nature
Jebb, D, Jones, G, Teeling, E C & al., E 2020, ' Six reference-quality genomes reveal evolution of bat adaptations ', Nature, vol. 583, pp. 578-584 . https://doi.org/10.1038/s41586-020-2486-3

Subject Terms: Multidisciplinary, Article, Phylogenetics, Evolutionary biology, Genomics, Virology, Human echolocation, Homology (biology), Myotis myotis, biology.organism_classification, biology, Rousettus, Genome, Laurasiatheria, Phylogenetic tree, Adaptation, physiological/genetics, Animals, Chiroptera/classification, DNA transposable elements/genetics, Evolution, molecular, Genome/genetics, Genomics/standards, Immunity/genetics, Molecular sequence annotation/standards, Phylogeny, RNA, untranslated/genetics, Reference standards, Reproducibility of results, Virus integration/genetics, Viruses/genetics, QH426 Genetics, QR180 Immunology, QR355 Virology, DAS, QH426, QR180, QR355, evolutionary biology, genomics, phylogenetics, virology

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2

Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes

Authors: Attardo, Geoffrey M., Abd-Alla, Adly M., Acosta-Serrano, Alvaro, Caljon, Guy, Matetovici, Irina, Van Den Abbeele, Jan, Abd-Alla, Adly M. M., Allen, James E., Bateta, Rosemary, Benoit, Joshua B., Bourtzis, Kostas, Caers, Jelle, Christensen, Mikkel B., Farrow, David W., Friedrich, Markus, Hua-Van, Aurelie, Jennings, Emily C., Larkin, Denis M., Lawson, Daniel, Lehane, Michael J., Lenis, Vasileios P., Lowy-Gallego, Ernesto, Macharia, Rosaline W., Malacrida, Anna R., Marco, Heather G., Masiga, Daniel, Maslen, Gareth L., Meisel, Richard P., Meki, Irene, Michalkova, Veronika, Miller, Wolfgang J., Minx, Patrick, Mireji, Paul O., Ometto, Lino, Parker, Andrew G., Rio, Rita, Rose, Clair, Rosendale, Andrew J., Rota-Stabelli, Omar, Savini, Grazia, Schoofs, Liliane, Scolari, Francesca, Swain, Martin T., Tak, Peter, Tomlinson, Chad, Tsiamis, George, Vigneron, Aurelien, Wang, Jingwen, Warren, Wesley C., Waterhouse, Robert M., Weirauch, Matthew T., Weiss, Brian L., Wilson, Richard K., Zhao, Xin, Aksoy, Serap

Source: Genome Biology
Genome biology
Genome biology, vol 20, iss 1
Genome biology, vol. 20, no. 1, pp. 187
Genome Biology, Vol 20, Iss 1, Pp 1-31 (2019)

Subject Terms: Research, Tsetse, Trypanosomiasis, Hematophagy, Lactation, Disease, Neglected, Symbiosis, Biology, Human medicine, Engineering sciences. Technology, Animals, Drosophila melanogaster, Tsetse Flies, Trypanosoma, Wolbachia, Insect Proteins, DNA Transposable Elements, Mutagenesis, Insertional, Genomics, Insect Vectors, Phylogeny, Gene Expression Regulation, Repetitive Sequences, Nucleic Acid, Sequence Homology, Amino Acid, Synteny, Genes, Insect, Geography, Female, Male, Genome, X-Linked, Bioinformatics, Environmental Sciences, Biological Sciences, Information and Computing Sciences, DNA Transposable Elements/genetics, Drosophila melanogaster/genetics, Genes, Insect, Genes, X-Linked, Genome, Insect, Insect Proteins/genetics, Insect Vectors/genetics, Mutagenesis, Insertional/genetics, Repetitive Sequences, Nucleic Acid/genetics, Sequence Homology, Amino Acid, Synteny/genetics, Trypanosoma/parasitology, Tsetse Flies/genetics, Wolbachia/genetics, Settore AGR/11 - ENTOMOLOGIA GENERALE E APPLICATA, Gene, Animal trypanosomiasis, medicine.disease, medicine, biology.organism_classification, biology, Evolutionary biology, Obligate, Vertebrate, biology.animal, qu_460, qx_505, qx_70, lcsh:Biology (General), lcsh:QH301-705.5, lcsh:Genetics, lcsh:QH426-470

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http://europepmc.org/articles/PMC6721284

3

On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements

Authors: Bourgeois, Yann, Boissinot, Stéphane

Source: Genes, Vol 10, Iss 6, p 419 (2019)
Genes
Bourgeois, Y & Boissinot, S 2019, ' On the population dynamics of junk : a review on the population genomics of transposable elements ', Genes, vol. 10, no. 6 . https://doi.org/10.3390/genes10060419

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https://www.mdpi.com/2073-4425/10/6/419

4

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila

Authors: Rech, Gabriel E., Bogaerts-Márquez, María, Barrón, Maite G., Merenciano, Miriam, Villanueva-Cañas, José Luis, Horváth, Vivien, Fiston-Lavier, Anna-Sophie, Luyten, Isabelle, Venkataram, Sandeep, Quesneville, Hadi, Petrov, Dmitri A., González, Josefa

Contributors: Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS), National Institutes of Health [R01-GM089926, R35-GM118165], European Project: 647900,H2020,ERC-2014-CoG,DROSADAPTATION(2016), Unité de Recherche Génomique Info (URGI), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), European Commission, National Institutes of Health (US)

Source: PLoS Genetics
PLoS Genetics, Public Library of Science, 2019, 15 (2), pp.e1007900. ⟨10.1371/journal.pgen.1007900⟩
PLOS Genetics
Plos Genetics 2 (15), 1-33. (2019)
PLoS Genetics, Vol 15, Iss 2, p e1007900 (2019)

Subject Terms: genome-wide patterns, genetic-variation, positive selection, reference panel, melanogaster, adaptation, sequence, evolution, population, insecticide resistance, MESH: Animals, MESH: Behavior, Animal: physiology, MESH: Selection, Genetic: genetics, MESH: Stress, Physiological: genetics, MESH: DNA Transposable Elements: genetics, MESH: Drosophila melanogaster: genetics, MESH: Evolution, Molecular, MESH: Gene Expression Regulation, Developmental: genetics, MESH: Gene Frequency: genetics, MESH: Genome, Insect: genetics, MESH: Mutation: genetics, MESH: Polymorphism, Single Nucleotide: genetics, [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE], Cancer Research, Genetics(clinical), Genetics, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Biology, Population, education.field_of_study, education, Gene, Single-nucleotide polymorphism, Genetic variation, Drosophila melanogaster, biology.organism_classification, Natural selection, Evolutionary biology, Reference genome, Adaptation, [SDV.GEN]Life Sciences [q-bio]/Genetics, [SDV]Life Sciences [q-bio], Invertebrate genomics, Alcohols, Gene ontologies, Chi square tests, Evolutionary adaptation, Gene expression, Genome analysis, Research Article, Biology and Life Sciences, Genomics, Animal Genomics, Research and Analysis Methods, Animal Studies, Experimental Organism Systems, Model Organisms, Animal Models, Organisms, Eukaryota, Animals, Invertebrates, Arthropoda, Insects, Drosophila, Physical Sciences, Chemistry, Chemical Compounds, Organic Compounds, Organic Chemistry, Computational Biology, Mathematical and Statistical Techniques, Statistical Methods, Statistical Hypothesis Testing, Mathematics, Statistics, Evolutionary Biology, Evolutionary Processes, Phenotype, Transposable element, QH426-470

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https://hal.archives-ouvertes.fr/hal-02306987

5

Mild inborn errors of metabolism in commonly used inbred mouse strains

Authors: Leandro, João, Violante, Sara, Argmann, Carmen A., Hagen, Jacob, Dodatko, Tetyana, Bender, Aaron, Zhang, Wei, Williams, Evan G., Bachmann, Alexis M., Auwerx, Johan, Yu, Chunli, Houten, Sander M.

Subject Terms: Article, Animals, DNA Transposable Elements/genetics, Ketone Oxidoreductases/genetics, Male, Metabolism, Inborn Errors/diagnosis/genetics, Metabolomics, Mice, Mice, 129 Strain, Mice, Inbred C57BL, Mice, Inbred DBA, Mice, Inbred Strains/genetics, Phenotype, Sequence Analysis, RNA, Inborn errors of metabolism, Inbred mouse strains, Mouse genetics, Recombinant inbred mouse strains, Splicing defects, Genetics & genetic processes [F10] [Life sciences], Génétique & processus génétiques [F10] [Sciences du vivant], Endocrinology, Genetics, Molecular Biology, Biochemistry, Endocrinology, Diabetes and Metabolism, Messenger RNA, Isovaleric Acidemia, RNA splicing, BCKDHB, Gene, Intron, Biology, Exon, DHTKD1

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https://europepmc.org/articles/PMC6535113/

6

Necroptosis microenvironment directs lineage commitment in liver cancer

Contributors: Universitätsklinikum Tübingen - University Hospital of Tübingen, Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen, Organisation Nucléaire et Oncogenèse - Nuclear Organization and Oncogenesis, Institut Pasteur [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM), Equipe labellisée Ligue contre le Cancer, National Cancer Institute [Bethesda] (NCI-NIH), National Institutes of Health [Bethesda] (NIH), Universität Zürich [Zürich] (UZH), Universitätsklinikum RWTH Aachen - University Hospital Aachen [Aachen, Germany] (UKA), RWTH Aachen University, Vienna Biocenter - VBC [Austria], University of Tübingen, Heidelberg University Hospital [Heidelberg], German Cancer Research Center - Deutsches Krebsforschungszentrum [Heidelberg] (DKFZ), German Cancer Consortium [Heidelberg] (DKTK), This work was supported by the ERC Consolidator Grant ‘CholangioConcept’ (to L.Z.), the German Research Foundation (DFG): grants FOR2314, SFB685, SFB/TR209 and the Gottfried Wilhelm Leibniz Program (to L.Z.). Further funding was provided by the German Ministry for Education and Research (BMBF) (e:Med/Multiscale HCC), the German Universities Excellence Initiative (third funding line: ‘future concept’), the German Center for Translational Cancer Research (DKTK), the German-Israeli Cooperation in Cancer Research (DKFZ-MOST) (to L.Z.) and the Intramural Research Program of the Centre for Cancer Research, National Cancer Institute, National Institutes of Health (to X.W.W.). The group of O.B. is supported by grants from ANR-BMFT, Fondation ARC pour la recherche sur le Cancer, INSERM, and the National Cancer Institute of the National Institutes of Health under Award Number R01CA136533. O.B. is a CNRS fellow., We thank E. Rist, P. Schiemann, C. Fellmeth, C.-J. Hsieh, D. Heide and J. Hetzer for technical help or assistance. We thank A. Weber for providing TLR2 and TLR4 knockout mice and W. S. Alexander and The Walter and Eliza Hall Institute of Medical Research for providing Mlklfl/fl mice. The Cas9n–p19Arf sgRNA vector was provided by W. Xue. We thank the c.ATG facility of Tuebingen University and CeGaT Tuebingen for exome sequencing and data analysis., Organisation Nucléaire et Oncogenèse / Nuclear Organization and Oncogenesis

Source: Nature
Nature, Nature Publishing Group, 2018, 562 (7725), pp.69-75. ⟨10.1038/s41586-018-0519-y⟩
Seehawer, Marco; Heinzmann, Florian; D’Artista, Luana; Harbig, Jule; Roux, Pierre-François; Hoenicke, Lisa; Dang, Hien; Klotz, Sabrina; Robinson, Lucas; Doré, Grégory; Rozenblum, Nir; Kang, Tae-Won; Chawla, Rishabh; Buch, Thorsten; Vucur, Mihael; Roth, Mareike; Zuber, Johannes; Luedde, Tom; Sipos, Bence; Longerich, Thomas; Heikenwälder, Mathias; Wang, Xin Wei; Bischof, Oliver; Zender, Lars (2018). Necroptosis microenvironment directs lineage commitment in liver cancer. Nature, 562(7725):69-75.

Subject Terms: Cancer epigenetics, Cancer microenvironment, MESH: Animals, MESH: Apoptosis*/genetics, MESH: Cytokines/metabolism, MESH: DNA Transposable Elements/genetics, MESH: DNA-Binding Proteins/genetics, MESH: DNA-Binding Proteins/metabolism, MESH: Disease Models, Animal, MESH: Epigenesis, Genetic/genetics, MESH: Female, MESH: Gene Expression Profiling, MESH: Genes, myc, MESH: Genes, ras, MESH: Carcinogenesis/genetics, MESH: Hepatocytes/metabolism, MESH: Hepatocytes/pathology, MESH: Humans, MESH: Liver Neoplasms/genetics, MESH: Liver Neoplasms/pathology, MESH: Male, MESH: Mice, MESH: Mosaicism, MESH: Necrosis*/genetics, MESH: Proto-Oncogene Proteins c-akt/genetics, MESH: Carcinoma, Hepatocellular/genetics, MESH: T-Box Domain Proteins/genetics, MESH: T-Box Domain Proteins/metabolism, MESH: Transcription Factors/genetics, MESH: Transcription Factors/metabolism, MESH: Tumor Microenvironment, MESH: Carcinoma, Hepatocellular/pathology, MESH: Cell Differentiation, MESH: Cell Lineage*/genetics, MESH: Cholangiocarcinoma/genetics, MESH: Cholangiocarcinoma/pathology, MESH: Cyclin-Dependent Kinase Inhibitor p16/deficiency, [SDV.CAN]Life Sciences [q-bio]/Cancer, Article, Institute of Laboratory Animal Science, 570 Life sciences, biology, 610 Medicine & health, Multidisciplinary, Epigenome, Cancer research, Biology, Gene expression profiling, Cellular differentiation, Hepatic stellate cell, Liver cancer, medicine.disease, medicine, Tumor microenvironment, Necroptosis

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https://hal.archives-ouvertes.fr/hal-02348982

7

A heterochromatin-dependent transcription machinery drives piRNA expression

Authors: Andersen, Peter Refsing, Tirian, Laszlo, Vunjak, Milica, Brennecke, Julius

Source: Nature
Andersen, P R, Tirian, L, Vunjak, M & Brennecke, J 2017, ' A heterochromatin-dependent transcription machinery drives piRNA expression ', Nature, vol. 549, no. 7670, pp. 54-59 . https://doi.org/10.1038/nature23482

Subject Terms: Animals, Chromosomal Proteins, Non-Histone/metabolism, DNA Transposable Elements/genetics, Drosophila Proteins/metabolism, Drosophila melanogaster/genetics, Female, Gene Silencing, Heterochromatin/chemistry, Multigene Family/genetics, Promoter Regions, Genetic/genetics, RNA Polymerase II/chemistry, RNA, Small Interfering/biosynthesis, Telomeric Repeat Binding Protein 2/metabolism, Transcription Factor TFIIA/metabolism, Transcription Initiation, Genetic, Transcription, Genetic, Multidisciplinary, Transcription factor II D, RasiRNA, Genetics, Small RNA, Transcription factor II A, General transcription factor, Transcription (biology), RNA-induced transcriptional silencing, Biology, RNA polymerase II holoenzyme, Article

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8

Mariner Transposons Contain a Silencer: Possible Role of the Polycomb Repressive Complex 2

Authors: Bire, S., Casteret, S., Piégu, B., Beauclair, L., Moiré, N., Arensbuger, P., Bigot, Y.

Contributors: Physiologie de la reproduction et des comportements [Nouzilly] (PRC), Centre National de la Recherche Scientifique (CNRS)-Université de Tours-Institut Français du Cheval et de l'Equitation [Saumur]-Institut National de la Recherche Agronomique (INRA), Institute of Biotechnology, Center for Biotechnology, Université de Lausanne (UNIL), UR Infectiologie animale et Santé publique (UR IASP), Institut National de la Recherche Agronomique (INRA), Department of Biological Sciences [Pomona], California State Polytechnic University [Pomona] (CAL POLY POMONA), C.N.R.S. - I.N.R.A. - Groupement de Recherche CNRS 2157 - European Project SyntheGeneDelivery (N° 18716) - Ministère de l’Education Nationale, de la Recherche et de la Technologie, Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation [Saumur]-Université de Tours-Centre National de la Recherche Scientifique (CNRS), Infectiologie et Santé Publique (UMR ISP), Institut National de la Recherche Agronomique (INRA)-Université de Tours, Bigot, Yves

Source: PLoS Genetics
PLoS Genetics, Public Library of Science, 2016, 12 (3), pp.1-38. ⟨10.1371/journal.pgen.1005902⟩
Plos Genetics 3 (12), 1-38. (2016)
PLoS Genetics, Vol 12, Iss 3, p e1005902 (2016)
PLoS Genetics, vol. 12, no. 3, pp. e1005902

Subject Terms: [SDV]Life Sciences [q-bio], Cancer Research, Genetics(clinical), Genetics, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Silencer, Open reading frame, Promoter, Chromatin, PRC2, biology.protein, biology, Transposable element, Transcription factor, Transposase, Research Article, Biology and Life Sciences, Molecular Biology Techniques, Sequencing Techniques, Sequence Analysis, Sequence Motif Analysis, Research and Analysis Methods, Gene Expression, Gene Regulation, Silencer Elements, Biochemistry, Enzymology, Enzymes, Oxidoreductases, Luciferase, Proteins, Biological cultures, Cell lines, HeLa cells, Cell cultures, Cultured tumor cells, Genetic Elements, Mobile Genetic Elements, Transposable Elements, Genomics, Cell Biology, Chromosome Biology, Epigenetics, Marker Genes, Cloning, transposon, neurone, différenciation cellulaire, mutation, réseau de régulation de géne, lcsh:Genetics, lcsh:QH426-470, Amino Acid Motifs/genetics, Animals, Chromatin/genetics, DNA Transposable Elements/genetics, DNA-Binding Proteins/genetics, DNA-Binding Proteins/metabolism, Genome, HeLa Cells, Homeodomain Proteins/genetics, Humans, NFATC Transcription Factors/genetics, Polycomb Repressive Complex 2/genetics, Polycomb Repressive Complex 2/metabolism, Silencer Elements, Transcriptional/genetics, Transposases/genetics, Transposases/metabolism

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https://hal.archives-ouvertes.fr/hal-01413731

9

Dissemination of New Delhi metallo-β-lactamase-1-producing Acinetobacter baumannii in Europe

Authors: Bonnin, R.A., Poirel, L., Naas, T., Pirs, M., Seme, K., Schrenzel, J., Nordmann, P.

Source: Clinical Microbiology and Infection
Clinical Microbiology and Infection, Vol. 18, No 9 (2012) pp. E362-5

Subject Terms: Carbapenemase, Gram-negative rods, New Delhi metallo-β-lactamase, Tn/25, ddc:616, Acinetobacter Infections/microbiology, Acinetobacter baumannii/classification/drug effects/enzymology/genetics, Anti-Bacterial Agents/pharmacology, DNA Transposable Elements/genetics, Europe, Humans, Microbial Sensitivity Tests, Beta-Lactam Resistance, Beta-Lactamases/biosynthesis/genetics, Microbiology (medical), Infectious Diseases, General Medicine, Transposable element, Multiplex polymerase chain reaction, Microbiology, Metallo β lactamase, Typing, Acinetobacter baumannii, biology.organism_classification, biology, Multilocus sequence typing, Genotyping, New delhi, biochemical phenomena, metabolism, and nutrition, bacteria

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10

A survey of transposable element classification systems – a call for a fundamental update to meet the challenge of their diversity and complexity

Authors: Peter Arensburger, Benoît Piégu, Solenne Bire, Yves Bigot

Contributors: Physiologie de la reproduction et des comportements [Nouzilly] (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation [Saumur]-Université de Tours-Centre National de la Recherche Scientifique (CNRS), Institut de Biotechnologie, Université de Lausanne (UNIL)-Ecole Polytechnique Fédérale de Lausanne (EPFL), Department of Biological Sciences [Pomona], California State Polytechnic University [Pomona] (CAL POLY POMONA), CNRS, INRA, Groupement de Recherche CNRS 2157, Ministère de l’Education Nationale, de la Recherche et de la Technologie, Centre National de la Recherche Scientifique (CNRS)-Université de Tours-Institut Français du Cheval et de l'Equitation [Saumur]-Institut National de la Recherche Agronomique (INRA), Ecole Polytechnique Fédérale de Lausanne (EPFL)-Université de Lausanne (UNIL)

Source: Molecular Phylogenetics and Evolution
Molecular Phylogenetics and Evolution, Elsevier, 2015, 86, pp.90-109. ⟨10.1016/j.ympev.2015.03.009⟩
Molecular Phylogenetics and Evolution, vol. 86, pp. 90-109

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https://hal.archives-ouvertes.fr/hal-01154738

11

Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome

Authors: Inagaki, S., Miura-Kamio, A., Nakamura, Y., Lu, F., Cui, X., Cao, X., Kimura, Hiroshi, Saze, H., Kakutani, T.

Source: The EMBO journal. 29(No. 20):3496-506

Subject Terms: Arabidopsis/*genetics/metabolism, Arabidopsis Proteins/*genetics/metabolism, Chromatin/metabolism, DNA Methylation, DNA Transposable Elements/genetics, DNA-Binding Proteins/*genetics/metabolism, Epigenesis, Genetic, Gene Expression Regulation, Plant, Histone Demethylases/*genetics/metabolism, Histones/genetics/metabolism, Jumonji Domain-Containing Histone Demethylases, Mutation, Transcription, Genetic, Article, General Immunology and Microbiology, General Biochemistry, Genetics and Molecular Biology, Molecular Biology, General Neuroscience, Genetics, RNA-Directed DNA Methylation, Demethylase, biology.protein, biology, DNA methylation, Epigenomics, Histone methyltransferase, Epigenetics of physical exercise, Histone methylation, Histone code

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http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100733710

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12

Spread of Escherichia coli strains with high-level cefotaxime and ceftazidime resistance between the community, long-term care facilities, and hospital institutions

Authors: María Pérez-Vázquez, Belén Aracil, Silvia García-Cobos, Alberto Delgado-Iribarren, Carmen García, José Campos, Beatriz Orden, Emilia Cercenado, Jesús Oteo, Isabel Wilhelmi, Verónica Bautista, Carmen Navarro, Silvia Migueláñez

Contributors: Instituto de Salud Carlos III - ISCIII, Fondo de Investigaciones Sanitarias, Red Española de Investigación en Patología Infecciosa

Source: Journal of Clinical Microbiology, 44(7), 2359-2366. AMER SOC MICROBIOLOGY

Subject Terms: Adolescent, Adult, Anti-Bacterial Agents/pharmacology, Bacterial Outer Membrane Proteins/genetics, Blood/microbiology, Cefotaxime/pharmacology, Ceftazidime/pharmacology, Cluster Analysis, Community-Acquired Infections/epidemiology, Cross Infection/epidemiology, DNA Transposable Elements/genetics, Escherichia coli/classification, Escherichia coli Infections/epidemiology, Escherichia coli Proteins/analysis, Female, Humans, Male, Microbial Sensitivity Tests, Middle Aged, Molecular Epidemiology, Receptors, Cell Surface/genetics, Spain, Urine/microbiology, Virulence/genetics, Wounds and Injuries/microbiology, beta-Lactam Resistance, beta-Lactamases/analysis, Epidemiology, Microbiology (medical), Ciprofloxacin, medicine.drug, medicine, Biology, Virulence, Microbiology, Cefotaxime, Imipenem, Escherichia coli, medicine.disease_cause, Cefepime, Gentamicin, Virology, Ceftazidime, Anti-Bacterial Agents, Bacterial Outer Membrane Proteins, Blood, Community-Acquired Infections, Cross Infection, DNA Transposable Elements, Escherichia coli Infections, Escherichia coli Proteins, Receptors, Cell Surface, Urine, Wounds and Injuries, beta-Lactamases, Receptors, Cell Surface/genetics

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13

MAR Elements and Transposons for Improved Transgene Integration and Expression

Authors: Ley, Déborah, Harraghy, Niamh, Le Fourn, Valérie, BIRE, Solenne, Girod, Pierre-Alain, Regamey, Alexandre, Rouleux-Bonnin, Florence, Bigot, Yves, Mermod, Nicolas

Contributors: Institute of Biotechnology, Université de Lausanne (UNIL), Centre de Biotechnologie, Ecole Polytechnique Fédérale de Lausanne (EPFL), Selexis SA, Physiologie de la reproduction et des comportements [Nouzilly] (PRC), Institut National de la Recherche Agronomique (INRA)-Institut Français du Cheval et de l'Equitation [Saumur]-Université de Tours-Centre National de la Recherche Scientifique (CNRS), Génétique, immunothérapie, chimie et cancer (GICC), UMR 7292 CNRS [2012-2017] (GICC UMR 7292 CNRS), Université de Tours-Centre National de la Recherche Scientifique (CNRS), UFR de Médecine, Faculté de Médecine, Commission for technology and Innovation of the Swiss Confederation, Selexis SA, University of Lausanne, Egide Germaine de Stael grant, French Association for Research on Myopathies (AFM), Centre National de la Recherche Scientifique (CNRS)-Université de Tours-Institut Français du Cheval et de l'Equitation [Saumur]-Institut National de la Recherche Agronomique (INRA), Mermod, Nicolas

Source: PLoS ONE
PLoS ONE, Public Library of Science, 2013, 8 (4), pp.1-11. ⟨10.1371/journal.pone.0062784⟩
PLoS One, vol. 8, no. 4, pp. e62784
PLoS ONE, Vol 8, Iss 4, p e62784 (2013)
Plos One 4 (8), 1-11. (2013)

Subject Terms: Research Article, Biology, Biotechnology, Bioengineering, Biological Systems Engineering, Genetic Engineering, Transgenics, Genetics, Gene expression, DNA transcription, Molecular cell biology, Transposons, DNA transposons, Synthetic Biology, Engineering, [SDV.OT]Life Sciences [q-bio]/Other [q-bio.OT], Animals, CHO Cells, Cricetulus, DNA Transposable Elements/genetics, Electroporation, Gene Dosage, Gene Expression, Gene Expression Regulation, Gene Order, Genetic Vectors/genetics, Matrix Attachment Regions/genetics, Recombinant Proteins/genetics, Recombinant Proteins/metabolism, Transgenes, lcsh:Medicine, lcsh:R, lcsh:Science, lcsh:Q, Multidisciplinary, Gene silencing, Transgene, Scaffold/matrix attachment region, Population, education.field_of_study, education, Gene, Regulation of gene expression, Gene dosage, Transposable element, Autre (Sciences du Vivant), transposon, vecteur de transposon, application biotechnologique, élément, adn, transfert de gène, transgène, thérapie génique

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http://europepmc.org/articles/PMC3640020

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14

A Mutation With Major Effects on Drosophila melanogaster Sex Pheromones

Authors: François Bousquet, Josiane Alabouvette, Jean-François Ferveur, Fabrice Marcillac, Fabrice Savarit

Contributors: Développement et Communication Chimique chez les Insectes ( DCCI ), Centre National de la Recherche Scientifique ( CNRS ) -Université de Bourgogne ( UB ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Laboratoire d'Ethologie Expérimentale et Comparée ( LEEC ), Université Paris 13 ( UP13 ) -Université Sorbonne Paris Cité ( USPC ), Développement et Communication Chimique chez les Insectes (DCCI), Centre National de la Recherche Scientifique (CNRS)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Laboratoire d'Ethologie Expérimentale et Comparée (LEEC), Université Sorbonne Paris Cité (USPC)-Université Paris 13 (UP13)

Source: Genetics
Genetics, Genetics Society of America, 2005, 171 (4), pp.1617-1628
Genetics, Genetics Society of America, 2005, 171 (4), pp.1617-28

Subject Terms: Genetics, Allele, Transposable element, Sexual dimorphism, Gene, Sex pheromone, Drosophila melanogaster, biology.organism_classification, biology, Sex Attractants, Mutant, Molecular biology, [ SDV.NEU ] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC], Analysis of Variance, Animals, Chromatography, Gas, DNA Primers, DNA Transposable Elements/genetics, Drosophila Proteins/*genetics/metabolism, Drosophila melanogaster/enzymology/*genetics, Fatty Acid Desaturases/*genetics/metabolism, Female, Gene Components, Hexanes/chemistry, Hydrocarbons/chemistry/isolation & purification, Male, Mutation/*genetics, Reverse Transcriptase Polymerase Chain Reaction, Sex Attractants/analysis/*biosynthesis, Sex Factors, Species Specificity, [SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC], Investigations

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35fc03f115d4ae0a3e075e7bc728a624
http://academic.oup.com/genetics/article-pdf/171/4/1617/37339690/genetics1617.pdf

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15

Starvation, Together with the SOS Response, Mediates High Biofilm-Specific Tolerance to the Fluoroquinolone Ofloxacin

Authors: Steve P Bernier, David Lebeaux, Alicia S DeFrancesco, Amandine Valomon, Guillaume Soubigou, Jean-Yves Coppée, Jean-Marc Ghigo, Christophe Beloin

Contributors: Génétique des Biofilms, Institut Pasteur [Paris], Transcriptome et Epigénome (PF2), This work was supported by the Network of Excellence EuroPathoGenomics (LSHB-CT-2005-512061), the Fondation BNP-PARIBAS (J-MG), and the French Government's Investissement d'Avenir program, Laboratoire d'Excellence 'Integrative Biology of Emerging Infectious Diseases' (grant ANR-10-LABX-62-IBEID). SPB was the recipient of a postdoctoral fellowship from the Canadian Louis Pasteur Foundation. ASD was a MIT–France Program Fellow. DL was supported by a grant from the AXA Research Fund., We thank Sandra Da Re, Bénédicte Michel, Inigo Lasa, and Ivan Matic for generously providing some of the strains used in this study. We are grateful to Inigo Lasa, Christiane Forestier, Olaya Rendueles, Zeynep Baharoglu, Damien Balestrino, and Sandra Da Re for helpful discussions and critical reading of the manuscrip, ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), European Project: 512061,Network of Excellence EuroPathoGenomics

Source: PLoS Genetics
PLoS Genetics, Public Library of Science, 2013, 9 (1), pp.e1003144. ⟨10.1371/journal.pgen.1003144⟩
PLoS Genetics, Vol 9, Iss 1, p e1003144 (2013)

Subject Terms: Cancer Research, Genetics(clinical), Genetics, Molecular Biology, Ecology, Evolution, Behavior and Systematics, Multidrug tolerance, Bacterial genetics, Biofilm, SOS Response (Genetics), Microbiology, Ofloxacin, medicine.drug, medicine, SOS response, Stringent response, Biology, Drug tolerance, Bacterial biofilms, Antibiotics, Biofilms, Leucine, Lysine, Starvation, Glucose, Toxin-antitoxin modules, MESH: *Biofilms/drug effects/growth & development, MESH: *Drug Resistance, MESH: Ofloxacin/pharmacology, MESH: Plankton/drug effects/genetics, MESH: SOS Response (Genetics), MESH: Starvation, MESH: Bacterial/drug effects/genetics, MESH: *Drug Tolerance/genetics, MESH: *Escherichia coli/genetics/growth & development, MESH: Amino Acids/genetics, MESH: Anti-Bacterial Agents/pharmacology, MESH: DNA Transposable Elements/*genetics, MESH: Fluoroquinolones/pharmacology, MESH: Mutagenesis, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Research Article, Gene Expression, Molecular Genetics, Bacteriology, lcsh:Genetics, lcsh:QH426-470, biochemical phenomena, metabolism, and nutrition

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16

Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon

Authors: Carole Jaubert, Chloë Danioux, Jacques Oberto, Diego Cortez, Ariane Bize, Mart Krupovic, Qunxin She, Patrick Forterre, David Prangishvili, Guennadi Sezonov

Contributors: Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Institut de génétique et microbiologie [Orsay] (IGM), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Hydrosystèmes et Bioprocédés (UR HBAN), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Danish Archaea Centre, Department of Biology [Copenhagen], Faculty of Science [Copenhagen], University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Science [Copenhagen], University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU), Systématique, adaptation, évolution (SAE), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), This work was supported by PhD fellowships from the ‘Ministère de l'enseignement supérieur et de la recherche’ (C.J. and C.D.) and by Pasteur-Weizmann (C.J.) allocations., We thank Nuno Peixeiro and Sophie Schbath for helpful discussions.

Source: Open Biology
Biology Open
Biology Open, Royal Society, 2013, 3 (4), pp.130010. ⟨10.1098/rsob.130010⟩
Jaubert, C, Danioux, C, Oberto, J, Cortez, D, Bize, A, Krupovic, M, She, Q, Forterre, P, Prangishvili, D & Sezonov, G 2013, ' Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon ', Open Biology, vol. 3, no. 4 . https://doi.org/10.1098/rsob.130010
Open Biology, Vol 3, Iss 4 (2013)

Subject Terms: Research, Research Article, Archaea, Sulfolobus islandicus LAL14/1, genome analysis, genetics, CRISPR, SULFOLOBUS ISLANDICUS, MESH: Antitoxins/metabolism, MESH: Clustered Regularly Interspaced Short Palindromic Repeats/genetics, MESH: Genomics, MESH: Models, Genetic, MESH: Phylogeny, MESH: RNA, Transfer/genetics, MESH: RNA, Transfer/metabolism, MESH: Replication Origin/genetics, MESH: Sequence Analysis, DNA, MESH: Sulfolobus/classification, MESH: Sulfolobus/genetics, MESH: Toxins, Biological/metabolism, MESH: DNA Transposable Elements/genetics, MESH: Gene Transfer, Horizontal, MESH: Genes, Archaeal, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, General Biochemistry, Genetics and Molecular Biology, Immunology, General Neuroscience, Sulfolobus, biology.organism_classification, biology, Plasmid, Rudivirus, Genome, Genetics, Mobile genetic elements, CRISPR Loci, Insertion sequence, lcsh:Biology (General), lcsh:QH301-705.5

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http://europepmc.org/articles/PMC3718332

17

Tn125-Related Acquisition of blaNDM-Like Genes in Acinetobacter baumannii

Authors: Jacques Schrenzel, Patrice Nordmann, Martin Kaase, Anne E. Boulanger, Laurent Poirel, Rémy A. Bonnin

Source: Antimicrobial Agents and Chemotherapy
Antimicrobial Agents and Chemotherapy; Vol 56
Antimicrobial Agents and Chemotherapy, Vol. 56, No 2 (2012) pp. 1087-9

Subject Terms: Mechanisms of Resistance, ddc:616, Acinetobacter Infections/epidemiology/microbiology, Acinetobacter baumannii/drug effects/enzymology/genetics, Anti-Bacterial Agents/pharmacology, Bacterial Proteins/genetics, Carbapenems/pharmacology, DNA Transposable Elements/genetics, Drug Resistance, Multiple, Bacterial, Gene Transfer, Horizontal/genetics, Humans, Microbial Sensitivity Tests, Molecular Sequence Data, Sequence Analysis, DNA, Switzerland/epidemiology, Beta-Lactam Resistance, Beta-Lactamases/genetics, Beta-Lactams/pharmacology, Infectious Diseases, Pharmacology (medical), Pharmacology, Insertion sequence, Gene, Transposable element, Bacterial protein, Biology, Microbiology, Composite transposon, Acinetobacter baumannii, biology.organism_classification, DNA Transposable Elements, Acinetobacter infections

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6a0c9d5da331b2bcc4cb0dd2d46692c
https://europepmc.org/articles/PMC3264265/

18

Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes

Authors: Eric Wajnberg, Pierre Pontarotti, Martine Da Rocha, Pierre Abad, Julien Paganini, Philippe Gouret, Amandine Campan-Fournier, Etienne Danchin

Contributors: Laboratoire d'Analyse, Topologie, Probabilités (LATP), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), Institut Sophia Agrobiotech (ISA), Centre National de la Recherche Scientifique (CNRS)-Université Nice Sophia Antipolis (... - 2019) (UNS), COMUE Université Côte d'Azur (2015 - 2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015 - 2019) (COMUE UCA)-Institut National de la Recherche Agronomique (INRA), Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Programme CNRS 'Maladies Infectieuses Emergentes', ANR-08-GENM-0012,NEMATARGETS,Identification de nouveaux gènes-cibles pour le développement de stratégies spécifiques dirigées contre les nématodes parasites de plantes(2008), Institut Sophia Agrobiotech [Sophia Antipolis] (ISA), Institut National de la Recherche Agronomique (INRA)-Université Nice Sophia Antipolis (... - 2019) (UNS), Université Côte d'Azur (UCA)-Université Côte d'Azur (UCA)-Centre National de la Recherche Scientifique (CNRS), Danchin, Etienne

Source: PLoS ONE
PLoS ONE, Public Library of Science, 2012, 7 (11), pp.e50875. ⟨10.1371/journal.pone.0050875⟩
PLoS ONE, Vol 7, Iss 11, p e50875 (2012)
Plos One 11 (7), e50875. (2012)

Subject Terms: Phylogenetic analysis, Phylogenetics, Protein domains, Plant pathology, Proteomes, Gene ontologies, Invertebrate genomics, Horizontal gene transfer, MESH: Animals, MESH: Bacteria: genetics, MESH: Protozoan Proteins: genetics, MESH: Sequence Homology, Nucleic Acid, MESH: Soil Microbiology, MESH: Tylenchoidea: genetics, MESH: Base Composition: genetics, MESH: Codon: genetics, MESH: DNA Transposable Elements: genetics, MESH: Gene Duplication, MESH: Gene Transfer, Horizontal: genetics, MESH: Genes, Protozoan: genetics, MESH: Genetic Association Studies, MESH: Genome: genetics, MESH: Open Reading Frames: genetics, MESH: Parasites: genetics, MESH: Phylogeny, MESH: Plant Diseases: parasitology, MESH: Plant Roots: parasitology, MESH: Plasmids: genetics, [SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Medicine, Science, Multidisciplinary, Minimal genome, Genetics, Gene duplication, Gene, Genome, Biology, Mobile genetic elements, Genomics, Phytopathologie et phytopharmacie, Phytopathology and phytopharmacy, Zoologie des invertébrés, Invertebrate Zoology, Parasitologie, Parasitology, transfert latéral de gène, héritage, espèces à espèces, procaryote, nématode des racines, métazoaire, plante parasite, inférence, bactérie rhizosphérique, transmission, processus biologique, séquence génomique, phylogénétique, cluster de gènes, carbohydrate, plasmide, Research Article, Computational Biology, Genome Evolution, Molecular Genetics, Gene Duplication, Evolutionary Biology, Evolutionary Systematics, Genomic Evolution, Microbiology, Parasite Evolution, Plant Science, Plant Pathogens

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Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::128fbc7f519e04c77612efb51281aeaa
https://hal.archives-ouvertes.fr/hal-00831026

19

Dicer1 depletion in male germ cells leads to infertility due to cumulative meiotic and spermiogenic defects

Authors: Noora Kotaja, Yannick Romero, Bernard de Massy, Oliver Meikar, Henrik Kaessmann, Serge Nef, Marilena D. Papaioannou, Béatrice Conne, Manuela Weier, Jean-Dominique Vassalli, François P. Pralong, Corinne Grey

Contributors: Université de Genève (UNIGE), Institut de génétique humaine (IGH), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Université de Lausanne (UNIL), University of Turku

Source: PLOS ONE, Vol. 6, No 10 (2011) P. e25241
PloS one
PLoS ONE, Vol 6, Iss 10, p e25241 (2011)
PLoS ONE
PLoS ONE, Public Library of Science, 2011, 6 (10), pp.E25241. ⟨10.1371/journal.pone.0025241⟩
PLoS One, vol. 6, no. 10, pp. e25241

Subject Terms: ddc:576.5, Animals, Apoptosis/genetics, DEAD-box RNA Helicases/deficiency/genetics, DNA Transposable Elements/genetics, Gene Deletion, Gene Silencing, Infertility, Male/genetics/pathology, Male, Meiosis/genetics, Mice, Mice, Transgenic, MicroRNAs/genetics, Organ Size/genetics, Ribonuclease III/deficiency/genetics, Seminiferous Tubules/metabolism/pathology, Sperm Count, Spermatocytes/metabolism/pathology, Spermatogenesis/genetics, Spermatozoa/metabolism/pathology, Multidisciplinary, microRNA, Genetics, Endogeny, Gene silencing, Biology, Meiosis, Biogenesis, Germ cell, medicine.anatomical_structure, medicine, Ribonuclease III, biology.protein, Gene expression, lcsh:Medicine, lcsh:R, lcsh:Science, lcsh:Q, [SDV.BDD.GAM]Life Sciences [q-bio]/Development Biology/Gametogenesis, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Research Article, Anatomy and Physiology, Reproductive System, Reproductive Physiology, Developmental Biology, Cell Differentiation, Fertilization, Gene Expression, Gene Function, Molecular Cell Biology, Cell Division, Mitosis, Cell Death

File Description: application/pdf

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dca9f059c9178a618714c1647a7ceb37
https://archive-ouverte.unige.ch/unige:23647

20

Dicer is required for haploid male germ cell differentiation in mice

Authors: Noora Kotaja, Serge Nef, Ram Prakash Yadav, Marilena D. Papaioannou, Hanna Korhonen, Oliver Meikar, Yannick Romero, Pedro Luis Herrera, Jorma Toppari, Matteo Da Ros

Source: PLOS ONE, Vol. 6, No 9 (2011) P. e24821
PLoS ONE, Vol 6, Iss 9, p e24821 (2011)
PLoS ONE

Subject Terms: ddc:576.5, Animals, Animals, Newborn, Cell Differentiation, Centromere/genetics, DEAD-box RNA Helicases/deficiency/metabolism, DNA Transposable Elements/genetics, Gene Deletion, Haploidy, Infertility, Male/enzymology/pathology, Male, Meiosis, Mice, Mice, Knockout, Organ Specificity, Repetitive Sequences, Nucleic Acid/genetics, Ribonuclease III/deficiency/metabolism, Spermatids/metabolism/pathology/ultrastructure, Spermatocytes/metabolism/pathology/ultrastructure, Spermatogenesis, Spermatozoa/enzymology/pathology, Testis/enzymology/pathology/ultrastructure, lcsh:Medicine, lcsh:R, lcsh:Science, lcsh:Q, ta999, Multidisciplinary, Cellular differentiation, Biology, Molecular biology, Lin-4 microRNA precursor, Spermatid differentiation, Germ cell, medicine.anatomical_structure, medicine, Small nucleolar RNA, Small interfering RNA, Argonaute, Dicer, biology.protein, ta3111, Research Article, Biochemistry, Proteins, Developmental Biology, Fertilization, Molecular Development, Genetics, Epigenetics, Model Organisms, Animal Models, Mouse, Molecular Cell Biology, Gene Expression, fungi

Access URL: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab4ae79ae6ade065bd4ef4c47d3f03b9
https://archive-ouverte.unige.ch/unige:23483

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