Search Results - Copetti, Dario

The dark side of the genome: revealing the native transposable element/repeat content of eukaryotic genomes by Copetti, Dario, Wing, Rod A.

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Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice by Brozynska, Marta, Copetti, Dario, Furtado, Agnelo, Wing, Rod A., Crayn, Darren, Fox, Glen, Ishikawa, Ryuji, Henry, Robert J.

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Genome Puzzle Master (GPM)-An integrated pipeline for building and editing pseudomolecules from fragmented sequences by Zhang, Jianwei, Kudrna, Dave, Mu, Ting, Li, Weiming, Copetti, Dario, Yu, Yeisoo, Goicoechea, Jose Luis, Lei, Yang, Wing, Rod A.

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DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements by Wang, Jun, Yu, Yeisoo, Tao, Feng, Zhang, Jianwei, Copetti, Dario, Kudrna, Dave, Talag, Jayson, Lee, Seunghee, Wing, Rod A., Fan, Chuanzhu

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Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution by Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi, Teycheney, Pierre-Yves

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Tracing ancestor rice of Suriname Maroons back to its African origin by van Andel, Tinde R., Meyer, Rachel S., Aflitos, Saulo A., Carney, Judith A., Veltman, Margaretha A., Copetti, Dario, Flowers, Jonathan M., Havinga, Reinout M., Maat, Harro, Purugganan, Michael D., Wing, Rod A., Schranz, M. Eric

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Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti by Copetti, Dario, Búrquez, Alberto, Bustamante, Enriquena, Charboneau, Joseph L. M., Childs, Kevin L., Eguiarte, Luis E., Lee, Seunghee, Liu, Tiffany L., McMahon, Michelle M., Whiteman, Noah K., Wing, Rod A., Wojciechowski, Martin F., Sanderson, Michael J.

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Rice SNP-seek database update: new SNPs, indels, and queries by Mansueto, Locedie, Fuentes, Roven Rommel, Borja, Frances Nikki, Detras, Jeffery, Abriol-Santos, Juan Miguel, Chebotarov, Dmytro, Sanciangco, Millicent, Palis, Kevin, Copetti, Dario, Poliakov, Alexandre, Dubchak, Inna, Solovyev, Victor, Wing, Rod A., Hamilton, Ruaraidh Sackville, Mauleon, Ramil, McNally, Kenneth L., Alexandrov, Nickolai

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Evolution and diversity of the wild rice Oryza officinalis Complex, across continents, genome types, and ploidy levels by Shenton, Matt, Kobayashi, Masaaki, Terashima, Shin, Ohyanagi, Hajime, Copetti, Dario, Hernández-Hernández, Tania, Zhang, Jianwei, Ohmido, Nobuko, Fujita, Masahiro, Toyoda, Atsushi, Ikawa, Hiroshi, Fujiyama, Asao, Furuumi, Hiroyasu, Miyabayashi, Toshie, Kubo, Takahiko, Kudrna, David, Wing, Rod, Yano, Kentaro, Nonomura, Ken-ichi, Sato, Yutaka, Kurata, Nori

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Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice by Zhou, Yong, Yu, Zhichao, Chebotarov, Dmytro, Chougule, Kapeel, Lu, Zhenyuan, Rivera, Luis F., Kathiresan, Nagarajan, Al-Bader, Noor, Mohammed, Nahed, Alsantely, Aseel, Mussurova, Saule, Santos, João, Thimma, Manjula, Troukhan, Maxim, Fornasiero, Alice, Green, Carl D., Copetti, Dario, Kudrna, David, Llaca, Victor, Lorieux, Mathias, Zuccolo, Andrea, Ware, Doreen, McNally, Kenneth, Zhang, Jianwei, Wing, Rod A.

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Genome sequence of the model rice variety KitaakeX by Jain, Rashmi, Jenkins, Jerry, Shu, Shengqiang, Chern, Mawsheng, Martin, Joel A., Copetti, Dario, Duong, Phat Q., Pham, Nikki T., Kudrna, David A., Talag, Jayson, Schackwitz, Wendy S., Lipzen, Anna M., Dilworth, David, Bauer, Diane, Grimwood, Jane, Nelson, Catherine R., Xing, Feng, Xie, Weibo, Barry, Kerrie W., Wing, Rod A., Schmutz, Jeremy, Li, Guotian, Ronald, Pamela C.

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Oryza genome evolution through a tetraploid lens by Fornasiero, Alice, Feng, Tao, Al-Bader, Noor, Alsantely, Aseel, Mussurova, Saule, Hoang, Nam V., Misra, Gopal, Zhou, Yong, Fabbian, Leonardo, Mohammed, Nahed, Rivera Serna, Luis, Thimma, Manjula, Llaca, Victor, Parakkal, Praveena, Kudrna, David, Copetti, Dario, Rajasekar, Shanmugam, Lee, Seunghee, Talag, Jayson, Sobel-Sorenson, Chandler, Carpentier, Marie-Christine, Panaud, Olivier, McNally, Kenneth L., Zhang, Jianwei, Zuccolo, Andrea, Schranz, M. Eric, Wing, Rod A.

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Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data by Zhang, Jianwei, Chen, Ling-Ling, Sun, Shuai, Kudrna, Dave, Copetti, Dario, Li, Weiming, Mu, Ting, Jiao, Wen-Biao, Xing, Feng, Lee, Seunghee, Talag, Jayson, Song, Jia-Ming, Du, Bogu, Xie, Weibo, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa

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Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 by Zhang, Jianwei, Chen, Ling-Ling, Xing, Feng, Kudrna, David A., Yao, Wen, Copetti, Dario, Mu, Ting, Li, Weiming, Song, Jia-Ming, Xie, Weibo, Lee, Seunghee, Talag, Jayson, Shao, Lin, An, Yue, Zhang, Chun-Liu, Ouyang, Yidan, Sun, Shuai, Jiao, Wen-Biao, Lv, Fang, Du, Bogu, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Zhou, Zhi-Wei, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa

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Genomic variation in 3,010 diverse accessions of Asian cultivated rice by Wang, Wensheng, Mauleon, Ramil, Hu, Zhiqiang, Chebotarov, Dmytro, Tai, Shuaishuai, Wu, Zhichao, Li, Min, Zheng, Tianqing, Fuentes, Roven Rommel, Zhang, Fan, Mansueto, Locedie, Copetti, Dario, Sanciangco, Millicent, Palis, Kevin Christian, Xu, Jianlong, Sun, Chen, Fu, Binying, Zhang, Hongliang, Gao, Yongming, Zhao, Xiuqin, Shen, Fei, Cui, Xiao, Yu, Hong, Li, Zichao, Chen, Miaolin, Detras, Jeffrey, Zhou, Yongli, Zhang, Xinyuan, Zhao, Yue, Kudrna, Dave, Wang, Chunchao, Li, Rui, Jia, Ben, Lu, Jinyuan, He, Xianchang, Dong, Zhaotong, Xu, Jiabao, Li, Yanhong, Wang, Miao, Shi, Jianxin, Li, Jing, Zhang, Dabing, Lee, Seunghee, Hu, Wushu, Poliakov, Alexander, Dubchak, Inna, Ulat, Victor Jun, Borja, Frances Nikki, Mendoza, John Robert, Ali, Jauhar, Li, Jing, Gao, Qiang, Niu, Yongchao, Yue, Zhen, Naredo, Ma.Elizabeth B., Talag, Jayson, Wang, Xueqiang, Li, Jinjie, Fang, Xiaodong, Yin, Ye, Glaszmann, Jean-Christophe, Zhang, Jianwei, Li, Jiayang, Hamilton, Ruaraidh Sackville, Wing, Rod A., Ruan, Jue, Zhang, Gengyun, Wei, Chaochun, Alexandrov, Nickolai, McNally, Kenneth L., Li, Zhikang, Leung, Hei

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Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza by Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos, Wu, Cheng-chieh, Kao, Shu-Min, Zeng, Jhih-wun, Wei, Fu-Jin, Zhao, Qiang, Feng, Qi, El Baidouri, Moaine, Carpentier, Marie-Christine, Lasserre, Eric, Cooke, Richard, Rosa Farias, Daniel da, da Maia, Luciano Carlos, dos Santos, Railson S., Nyberg, Kevin G., McNally, Kenneth L., Mauleon, Ramil, Alexandrov, Nickolai, Schmutz, Jeremy, Flowers, Dave, Fan, Chuanzhu, Weigel, Detlef, Jena, Kshirod K., Wicker, Thomas, Chen, Mingsheng, Han, Bin, Henry, Robert, Hsing, Yue-ie C., Kurata, Nori, de Oliveira, Antonio Costa, Panaud, Olivier, Jackson, Scott A., Machado, Carlos A., Sanderson, Michael J., Long, Manyuan, Ware, Doreen, Wing, Rod A.

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De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome by White, Benjamen, Lux, Thomas, Rusholme-Pilcher, Bachel, Juhász, Angéla, Kaithakottil, Gemy, Duncan, Susan, Simmonds, James, Rees, Hannah, Wright, Jonathan, Colmer, Joshua, Ward, Sabrina, Joynson, Ryan, Coombes, Benedict, Irish, Naomi, Henderson, Suzanne, Barker, Tom, Chapman, Helen, Catchpole, Leah, Gharbi, Karim, Bose, Utpal, Okada, Moeko, Handa, Hirokazu, Nasuda, Shuhei, Shimizu, Kentaro K., Gundlach, Heidrun, Lang, Daniel, Naamati, Guy, Legg, Erik, Bharti, Arvind, Colgrave, Michelle, Haerty, Wilfried, Uauy, Cristobal, Swarbreck, David, Borrill, Philippa, Poland, Jesse, Krattinger, Simon, Stein, Nils, Mayer, Klaus, Pozniak, Curtis, Walkowiak, Sean, Klymiuk, Valentyna, Byrns, Brook, Nilsen, Kirby T., Ens, Jennifer, Wiebe, Krystalee, N’Diaye, Amidou, Hucl, Pierre J., Bin Xiao Fu, Gao, Liangliang, Delorean, Emily, Koo, Dal-Hoe, Fritz, Allan, Monat, Cécile, Himmelbach, Axel, Fiebig, Anne, Padmarasu, Sudharsan, Scholz, Uwe, Mascher, Martin, Haberer, Georg, Spannagl, Manuel, Kassa, Mulualem T., Fobert, Pierre, Kagale, Sateesh, Brinton, Jemima, Ramirez Gonzalez, Ricardo Humberto, Bevan, Michael, McKenzie, Neil, Steuernagel, Burkhard, Kolodziej, Markus C., Keller, Beat, Wicker, Thomas, Thambugala, Dinushika, McCartney, Curt, Bandi, Venkat, Nunez Siri, Jorge, Gutwin, Carl, Aquino, Catharine, Hatakeyama, Masaomi, Copetti, Dario, Halstead-Nussloch, Gwyneth, Paape, Timothy, Shimizu-Inatsugi, Rie, Ban, Tomohiro, Kawaura, Kanako, Tameshige, Toshiaki, Tsuji, Hiroyuki, Venturini, Luca, Clark, Matthew Derek, Clavijo, Bernardo Jose, Fosker, Christine, Garcia Accinelli, Gonzalo, Heavens, Darren, Krasileva, Ksenia, Hall, Anthony, Gardner, Keith, Fradgley, Nick, Percival-Alwyn, Lawrence, Cockram, James, Gutierrez-Gonzalez, Juan J., Muehlbauer, Gary J., Chu Shin Koh, Sharpe, Andrew G., Deek, Jasline, Costamagna, Alejandro C., Kanamori, Hiroyuki, Kobayashi, Fuminori, Tanaka, Tsuyoshi, Wu, Jianzhong, Kuo, Tony, Sese, Jun, Murata, Kazuki, Nabeka, Yusuke, Juliana, Philomin, Singh, Ravi Prakash, Budak, Hikmet, Small, Ian, Melonek, Joanna, Cloutier, Sylvie, Keeble-Gagnère, G., Tibbets, Josquin, Langridge, Peter, Chalmers, Kenneth, Distelfeld, Assaf

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